RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 KIRREL2Q6UWL6 708 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 RTL10Q7L3V2 364 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 KIAA0907Q7Z7F0 614 aaPredicted RBP13.67□□□□□ -0.22
CUX1-215ENST00000556210 TCTE3Q8IZS6 198 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 C19orf47Q8N9M1 422 aaKnown RBP13.67□□□□□ -0.22
CUX1-215ENST00000556210 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.67□□□□□ -0.22
CUX1-215ENST00000556210 NR4A3Q92570 626 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 TSLPQ969D9 159 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 PLEKHB1Q9UF11 243 aaPredicted RBP13.67□□□□□ -0.22
CUX1-215ENST00000556210 OR5K4A6NMS3 321 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 GPANK1O95872 356 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 OR7E24Q6IFN5 339 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 GKN2Q86XP6 184 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 GALNT6Q8NCL4 622 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 LGALS14Q8TCE9 139 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 TSPAN10Q9H1Z9 355 aaPredicted RBP13.67□□□□□ -0.22
CUX1-215ENST00000556210 CKLFQ9UBR5 152 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 KCND3Q9UK17 655 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 DOCK8Q8NF50 2099 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 A0A1B0GTH9 108 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 TMEM129A0AVI4 362 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 HCRTR1O43613 425 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 TAS2R43P59537 309 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 MS4A15Q8N5U1 240 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 MCOLN1Q9GZU1 580 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 AKAP7Q9P0M2 348 aaPredicted RBP13.67□□□□□ -0.22
CUX1-215ENST00000556210 PRUNE2Q8WUY3 3088 aa13.67□□□□□ -0.22
CUX1-215ENST00000556210 TRDV1A0A1B0GX56 115 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 GALR3O60755 368 aaPredicted RBP13.66□□□□□ -0.22
CUX1-215ENST00000556210 TNFRSF4P43489 277 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 PRKXP51817 358 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 ARHGAP11BQ3KRB8 267 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 NIPAL3Q6P499 406 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 C16orf52Q8NHV5 167 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 DERL3Q96Q80 235 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 ORAI3Q9BRQ5 295 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 AICDAQ9GZX7 198 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 GPN1Q9HCN4 374 aaPredicted RBP13.66□□□□□ -0.22
CUX1-215ENST00000556210 ENTPD2Q9Y5L3 495 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 EPOPA6NHQ4 379 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 KDM4EB2RXH2 506 aaPredicted RBP13.66□□□□□ -0.22
CUX1-215ENST00000556210 CFL1P23528 166 aaKnown RBP13.66□□□□□ -0.22
CUX1-215ENST00000556210 TACR3P29371 465 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 LSSP48449 732 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 TOR2AQ5JU69 321 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 YOD1Q5VVQ6 348 aaPredicted RBP13.66□□□□□ -0.22
CUX1-215ENST00000556210 C16orf47Q6ZP98 133 aaPredicted RBP13.66□□□□□ -0.22
CUX1-215ENST00000556210 UPRTQ96BW1 309 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 NXPE2Q96DL1 559 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 SIGLEC11Q96RL6 698 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 SLC25A19Q9HC21 320 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 B3GNT2Q9NY97 397 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 KCNN3Q9UGI6 736 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 TRPM7Q96QT4 1865 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 SLC16A7O60669 478 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 AHSA1O95433 338 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 CD2P06729 351 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 EIF4EP06730 217 aaKnown RBP13.66□□□□□ -0.22
CUX1-215ENST00000556210 GABRG2P18507 467 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 C1orf53Q5VUE5 145 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 FAM46BQ96A09 425 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 ZNF775Q96BV0 537 aaPredicted RBP13.66□□□□□ -0.22
CUX1-215ENST00000556210 MRPL38Q96DV4 380 aaKnown RBP13.66□□□□□ -0.22
CUX1-215ENST00000556210 CMKLR1Q99788 373 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 MGAT4CQ9UBM8 478 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 PRODH2Q9UF12 536 aa13.66□□□□□ -0.22
CUX1-215ENST00000556210 TRAV18A0A075B6X5 111 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 HRGP04196 525 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 HTR2AP28223 471 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 CLDN20P56880 219 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 ACTC1P68032 377 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 ACTA1P68133 377 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 SIRPAP78324 504 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 DGCR2P98153 550 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 PYHIN1Q6K0P9 492 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 LRRC28Q86X40 367 aaPredicted RBP13.65□□□□□ -0.22
CUX1-215ENST00000556210 SLC38A6Q8IZM9 456 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 DHRS9Q9BPW9 319 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 ALG12Q9BV10 488 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 POT1Q9NUX5 634 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 IL20Q9NYY1 176 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 KIR2DS5A0A0G2JLQ3 304 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 A0A0G2JNG1 304 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 KIR2DS3K7RE56 304 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 KIR2DL1P43626 348 aaPredicted RBP13.65□□□□□ -0.22
CUX1-215ENST00000556210 MELKQ14680 651 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 KIR2DS5Q14953 304 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 LPAL2Q16609 132 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 Q5BKY6 102 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 LRRN1Q6UXK5 716 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 QSOX2Q6ZRP7 698 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 BAHD1Q8TBE0 780 aaPredicted RBP13.65□□□□□ -0.22
CUX1-215ENST00000556210 DUSP19Q8WTR2 217 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 ELSPBP1Q96BH3 223 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 ATG5Q9H1Y0 275 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 SERTAD3Q9UJW9 196 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 XIRP2A4UGR9 3374 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 A0A0A6YYJ9 748 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 OR5K3A6NET4 321 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 UBL4AP11441 157 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms