RNA–Protein interactions for RNA: ENST00000553039.1

CKAP4-203, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 4

Gene CKAP4, Length 573 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-203ENST00000553039 FIP1L1Q6UN15 594 aaKnown RBP4.41□□□□□ -1.7
CKAP4-203ENST00000553039 ZNF620Q6ZNG0 422 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 MEPCEQ7L2J0 689 aaKnown RBP4.41□□□□□ -1.7
CKAP4-203ENST00000553039 LRRC70Q7Z2Q7 622 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 ABHD12BQ7Z5M8 362 aaPredicted RBP4.41□□□□□ -1.7
CKAP4-203ENST00000553039 GALNT7Q86SF2 657 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 CARM1Q86X55 608 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 ARMC8Q8IUR7 673 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 WDFY1Q8IWB7 410 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 GSPT2Q8IYD1 628 aaKnown RBP4.41□□□□□ -1.7
CKAP4-203ENST00000553039 MMGT1Q8N4V1 131 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 TMEM86BQ8N661 226 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 STPG3Q8N7X2 389 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 OR4N2Q8NGD1 307 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 OR52E2Q8NGJ4 325 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 FAM45AQ8TCE6 357 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 ZNF675Q8TD23 568 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 STON2Q8WXE9 905 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 ZNF75CPQ92670 426 aaPredicted RBP4.41□□□□□ -1.7
CKAP4-203ENST00000553039 RAB8BQ92930 207 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 ZHX1-C8orf76Q96EF9 292 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 SLC47A1Q96FL8 570 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 HES6Q96HZ4 224 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 PBKQ96KB5 322 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 FAM71F1Q96KD3 344 aaPredicted RBP4.41□□□□□ -1.7
CKAP4-203ENST00000553039 VSTM2LQ96N03 204 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 ZNF317Q96PQ6 595 aaPredicted RBP4.41□□□□□ -1.7
CKAP4-203ENST00000553039 MTERF1Q99551 399 aaKnown RBP4.41□□□□□ -1.7
CKAP4-203ENST00000553039 SERPINI1Q99574 410 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 SRXN1Q9BYN0 137 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 XAB2Q9HCS7 855 aaKnown RBP4.41□□□□□ -1.7
CKAP4-203ENST00000553039 Q9N2J8 555 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 PFDN4Q9NQP4 134 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 SERINC1Q9NRX5 453 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 ZNF275Q9NSD4 429 aaPredicted RBP4.41□□□□□ -1.7
CKAP4-203ENST00000553039 TMEM45AQ9NWC5 275 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 AURKAIP1Q9NWT8 199 aaPredicted RBP4.41□□□□□ -1.7
CKAP4-203ENST00000553039 CD274Q9NZQ7 290 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 KLHL14Q9P2G3 628 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 CES1P1Q9UKY3 287 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 ZNF346Q9UL40 294 aaKnown RBP4.41□□□□□ -1.7
CKAP4-203ENST00000553039 ICAM5Q9UMF0 924 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 PACSIN2Q9UNF0 486 aaPredicted RBP4.41□□□□□ -1.7
CKAP4-203ENST00000553039 PCDHGB5Q9Y5G0 923 aa4.41□□□□□ -1.7
CKAP4-203ENST00000553039 IGKV3D-15A0A087WSY6 115 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 IGHV3-15A0A0B4J1V0 119 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 A0A1W2PS29 197 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 OR6C65A6NJZ3 312 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 SAC3D1A6NKF1 404 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 C17orf51A8MQB3 221 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 NUDT19A8MXV4 375 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 CXorf49A8MYA2 514 aaPredicted RBP4.4□□□□□ -1.71
CKAP4-203ENST00000553039 SRRM5B3KS81 715 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 M0R233 179 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 PGRMC1O00264 195 aaKnown RBP4.4□□□□□ -1.71
CKAP4-203ENST00000553039 KLF11O14901 512 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 TAPBPO15533 448 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 HOXA3O43365 443 aaPredicted RBP4.4□□□□□ -1.71
CKAP4-203ENST00000553039 COQ9O75208 318 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 SEMA3DO95025 777 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 UTS2O95399 124 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 GBAP04062 536 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 ZSCAN5DPP0CG00 497 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 CDH2P19022 906 aaPredicted RBP4.4□□□□□ -1.71
CKAP4-203ENST00000553039 FKBP2P26885 142 aaKnown RBP4.4□□□□□ -1.71
CKAP4-203ENST00000553039 TIA1P31483 386 aaKnown RBP eCLIP4.4□□□□□ -1.71
CKAP4-203ENST00000553039 CXCR5P32302 372 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 ETV4P43268 484 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 CCR9P51686 369 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 MAPK12P53778 367 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 GPX6P59796 221 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 SELENOVP59797 346 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 MRPS35P82673 323 aaKnown RBP4.4□□□□□ -1.71
CKAP4-203ENST00000553039 NAAAQ02083 359 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 ILF2Q12905 390 aaKnown RBP4.4□□□□□ -1.71
CKAP4-203ENST00000553039 TOP3AQ13472 1001 aaPredicted RBP4.4□□□□□ -1.71
CKAP4-203ENST00000553039 SNX1Q13596 522 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 E2F2Q14209 437 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 TRIP13Q15645 432 aaPredicted RBP4.4□□□□□ -1.71
CKAP4-203ENST00000553039 PLPPR5Q32ZL2 321 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 RBM20Q5T481 1227 aaKnown RBP4.4□□□□□ -1.71
CKAP4-203ENST00000553039 SEL1L2Q5TEA6 688 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 GRHL2Q6ISB3 625 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 ZDHHC24Q6UX98 284 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 CD300LDQ6UXZ3 194 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 Q6ZTK2 550 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 C9orf139Q6ZV77 190 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 ATP6V1C2Q8NEY4 427 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 B4GALNT2Q8NHY0 566 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 LINC01006Q8NI28 216 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 WDR20Q8TBZ3 569 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 TBC1D15Q8TC07 691 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 ACTRT1Q8TDG2 376 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 ZFP90Q8TF47 636 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 C1orf54Q8WWF1 131 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 SLC9A6Q92581 669 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 ALG3Q92685 438 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 TAF15Q92804 592 aaKnown RBP eCLIP4.4□□□□□ -1.71
CKAP4-203ENST00000553039 KLHL29Q96CT2 875 aa4.4□□□□□ -1.71
CKAP4-203ENST00000553039 RNF125Q96EQ8 232 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms