RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 AP4B1Q9Y6B7 739 aa3.11□□□□□ -1.91
LIMA1-206ENST00000550611 NINQ8N4C6 2090 aa3.11□□□□□ -1.91
LIMA1-206ENST00000550611 TENM2Q9NT68 2774 aa3.11□□□□□ -1.91
LIMA1-206ENST00000550611 YLPM1P49750 1951 aaKnown RBP3.11□□□□□ -1.91
LIMA1-206ENST00000550611 HERC2O95714 4834 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 DNAH1Q9P2D7 4330 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 PRR14LQ5THK1 2151 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 IGLV5-39A0A0G2JS06 123 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 A0A1W2PP18 115 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 C1orf226A1L170 272 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 FAM90A20PA6NIJ5 464 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 ZNF814B7Z6K7 855 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 E7ESA3 106 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 H7C417 338 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 J3KRW8 73 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 UBXN8O00124 270 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 CLIC1O00299 241 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 ACOT8O14734 319 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 TNFRSF13BO14836 293 aaPredicted RBP3.1□□□□□ -1.91
LIMA1-206ENST00000550611 CLOCKO15516 846 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 PLOD3O60568 738 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 RAMP1O60894 148 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 KERAO60938 352 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 NME6O75414 186 aaPredicted RBP3.1□□□□□ -1.91
LIMA1-206ENST00000550611 PIAS1O75925 651 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 BCAS2O75934 225 aaPredicted RBP3.1□□□□□ -1.91
LIMA1-206ENST00000550611 PGM3O95394 542 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 KLK1P06870 262 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 FGF2P09038 288 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 FCGR2AP12318 317 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 SLC25A16P16260 332 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 CSNK2A2P19784 350 aaPredicted RBP3.1□□□□□ -1.91
LIMA1-206ENST00000550611 MATN1P21941 496 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 USF1P22415 310 aaPredicted RBP3.1□□□□□ -1.91
LIMA1-206ENST00000550611 TCEA1P23193 301 aaKnown RBP3.1□□□□□ -1.91
LIMA1-206ENST00000550611 PSMA4P25789 261 aaKnown RBP3.1□□□□□ -1.91
LIMA1-206ENST00000550611 TTKP33981 857 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 FEN1P39748 380 aaKnown RBP3.1□□□□□ -1.91
LIMA1-206ENST00000550611 COMPP49747 757 aaPredicted RBP3.1□□□□□ -1.91
LIMA1-206ENST00000550611 KRTAP10-12P60413 245 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 RPS3AP61247 264 aaKnown RBP3.1□□□□□ -1.91
LIMA1-206ENST00000550611 PSPHP78330 225 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 CFHR3Q02985 330 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 BSPH1Q075Z2 132 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 DDX39BQ13838 428 aaKnown RBP3.1□□□□□ -1.91
LIMA1-206ENST00000550611 GANABQ14697 944 aaKnown RBP3.1□□□□□ -1.91
LIMA1-206ENST00000550611 SLMAPQ14BN4 828 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 MORF4L2Q15014 288 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 TSC22D1Q15714 1073 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 LTB4RQ15722 352 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 NRF1Q16656 503 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 RUNDC3AQ59EK9 446 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 FAM120AOSQ5T036 256 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 ATG16L1Q676U5 607 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 METTL2BQ6P1Q9 378 aaKnown RBP3.1□□□□□ -1.91
LIMA1-206ENST00000550611 APOOLQ6UXV4 268 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 DCDC5Q6ZRR9 648 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 Q6ZSR9 355 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 NUFIP2Q7Z417 695 aaKnown RBP3.1□□□□□ -1.91
LIMA1-206ENST00000550611 NUDT13Q86X67 352 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 METTL4Q8N3J2 472 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 TEX9Q8N6V9 391 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 KBTBD8Q8NFY9 601 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 TRIM58Q8NG06 486 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 OR4K17Q8NGC6 315 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 OR4N2Q8NGD1 307 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 OR52B6Q8NGF0 335 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 OR5M1Q8NGP8 315 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 STAG3L4Q8TBR4 150 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 C10orf105Q8TEF2 133 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 DUSP19Q8WTR2 217 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 GLMPQ8WWB7 406 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 MSI2Q96DH6 328 aaKnown RBP3.1□□□□□ -1.91
LIMA1-206ENST00000550611 ERP27Q96DN0 273 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 KTI12Q96EK9 354 aaPredicted RBP3.1□□□□□ -1.91
LIMA1-206ENST00000550611 CFAP36Q96G28 342 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 GPR78Q96P69 363 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 SERPINI1Q99574 410 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 GPR22Q99680 433 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 NPAS1Q99742 590 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 PKP2Q99959 881 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 CENPKQ9BS16 269 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 NTMT1Q9BV86 223 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 STMN4Q9H169 189 aaPredicted RBP3.1□□□□□ -1.91
LIMA1-206ENST00000550611 ALG9Q9H6U8 611 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 ANKRA2Q9H9E1 313 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 FANCFQ9NPI8 374 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 ARL8BQ9NVJ2 186 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 PAQR5Q9NXK6 330 aaPredicted RBP3.1□□□□□ -1.91
LIMA1-206ENST00000550611 GAR1Q9NY12 217 aaKnown RBP3.1□□□□□ -1.91
LIMA1-206ENST00000550611 CISD1Q9NZ45 108 aaKnown RBP3.1□□□□□ -1.91
LIMA1-206ENST00000550611 NUDT4Q9NZJ9 180 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 FLRT3Q9NZU0 649 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 MED11Q9P086 117 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 OPTCQ9UBM4 332 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 BCAP29Q9UHQ4 241 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 DKKL1Q9UK85 242 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 CHMP2BQ9UQN3 213 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 RNF11Q9Y3C5 154 aa3.1□□□□□ -1.91
LIMA1-206ENST00000550611 PCDHGB1Q9Y5G3 927 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms