RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 NANSQ9NR45 359 aa18.93■□□□□ 0.62
VPS29-206ENST00000549578 KLHL13Q9P2N7 655 aa18.93■□□□□ 0.62
VPS29-206ENST00000549578 MBD3L4A6NDZ8 208 aaPredicted RBP18.92■□□□□ 0.62
VPS29-206ENST00000549578 MBD3L3A6NE82 208 aaPredicted RBP18.92■□□□□ 0.62
VPS29-206ENST00000549578 MBD3L5A6NJ08 208 aaPredicted RBP18.92■□□□□ 0.62
VPS29-206ENST00000549578 LRRTM2O43300 516 aa18.92■□□□□ 0.62
VPS29-206ENST00000549578 FZD7O75084 574 aa18.92■□□□□ 0.62
VPS29-206ENST00000549578 CCNB2O95067 398 aa18.92■□□□□ 0.62
VPS29-206ENST00000549578 FCGR2AP12318 317 aa18.92■□□□□ 0.62
VPS29-206ENST00000549578 OMPP47874 163 aa18.92■□□□□ 0.62
VPS29-206ENST00000549578 NUP107P57740 925 aa18.92■□□□□ 0.62
VPS29-206ENST00000549578 MFSD13AQ14CX5 517 aa18.92■□□□□ 0.62
VPS29-206ENST00000549578 MAMDC2Q7Z304 686 aaPredicted RBP18.92■□□□□ 0.62
VPS29-206ENST00000549578 MBD3L2Q8NHZ7 208 aaPredicted RBP18.92■□□□□ 0.62
VPS29-206ENST00000549578 PKP2Q99959 881 aa18.92■□□□□ 0.62
VPS29-206ENST00000549578 NAA11Q9BSU3 229 aaPredicted RBP18.92■□□□□ 0.62
VPS29-206ENST00000549578 RNF122Q9H9V4 155 aa18.92■□□□□ 0.62
VPS29-206ENST00000549578 ZNF229Q9UJW7 825 aa18.92■□□□□ 0.62
VPS29-206ENST00000549578 HIVEP3Q5T1R4 2406 aa18.92■□□□□ 0.62
VPS29-206ENST00000549578 PHF3Q92576 2039 aaKnown RBP18.92■□□□□ 0.62
VPS29-206ENST00000549578 MED12LQ86YW9 2145 aa18.92■□□□□ 0.62
VPS29-206ENST00000549578 DOCK7Q96N67 2140 aa18.92■□□□□ 0.62
VPS29-206ENST00000549578 AQP7P3A6NL99 342 aa18.91■□□□□ 0.62
VPS29-206ENST00000549578 SAGP10523 405 aaPredicted RBP18.91■□□□□ 0.62
VPS29-206ENST00000549578 DNAJA1P31689 397 aaKnown RBP18.91■□□□□ 0.62
VPS29-206ENST00000549578 P2RY4P51582 365 aa18.91■□□□□ 0.62
VPS29-206ENST00000549578 ELF3P78545 371 aaPredicted RBP18.91■□□□□ 0.62
VPS29-206ENST00000549578 MICAQ29983 383 aa18.91■□□□□ 0.62
VPS29-206ENST00000549578 ABLIM2Q6H8Q1 611 aa18.91■□□□□ 0.62
VPS29-206ENST00000549578 MYO7BQ6PIF6 2116 aa18.91■□□□□ 0.62
VPS29-206ENST00000549578 ZER1Q7Z7L7 766 aa18.91■□□□□ 0.62
VPS29-206ENST00000549578 CDK20Q8IZL9 346 aa18.91■□□□□ 0.62
VPS29-206ENST00000549578 GCNT2Q8N0V5 402 aa18.91■□□□□ 0.62
VPS29-206ENST00000549578 TM9SF2Q99805 663 aa18.91■□□□□ 0.62
VPS29-206ENST00000549578 SEMA6AQ9H2E6 1030 aa18.91■□□□□ 0.62
VPS29-206ENST00000549578 CHST11Q9NPF2 352 aa18.91■□□□□ 0.62
VPS29-206ENST00000549578 CLEC4AQ9UMR7 237 aa18.91■□□□□ 0.62
VPS29-206ENST00000549578 TMEM5Q9Y2B1 443 aa18.91■□□□□ 0.62
VPS29-206ENST00000549578 CORINQ9Y5Q5 1042 aa18.91■□□□□ 0.62
VPS29-206ENST00000549578 A0A1B0GUH1 482 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 CDC42EP2O14613 210 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 CYTIPO60759 359 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 ASAH2BP0C7U1 165 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 TIMP3P35625 211 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 C4orf17Q53FE4 359 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 ZNF770Q6IQ21 691 aaPredicted RBP18.9■□□□□ 0.62
VPS29-206ENST00000549578 PGBD2Q6P3X8 592 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 TMPRSS11FQ6ZWK6 438 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 H1FNTQ75WM6 255 aaPredicted RBP18.9■□□□□ 0.62
VPS29-206ENST00000549578 HS3ST5Q8IZT8 346 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 KDM8Q8N371 416 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 NAXEQ8NCW5 288 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 OR5J2Q8NH18 312 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 INTS12Q96CB8 462 aaKnown RBP18.9■□□□□ 0.62
VPS29-206ENST00000549578 GPA33Q99795 319 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 KRCC1Q9NPI7 259 aaPredicted RBP18.9■□□□□ 0.62
VPS29-206ENST00000549578 MRPL39Q9NYK5 338 aaKnown RBP18.9■□□□□ 0.62
VPS29-206ENST00000549578 HTR3EA5X5Y0 456 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 EFCAB9A8MZ26 197 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 HIST1H2ABP04908 130 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 PER3P56645 1201 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 RASGEF1BQ0VAM2 473 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 PMS2P3Q13401 168 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 GK3PQ14409 553 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 HIST3H2AQ7L7L0 130 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 NANOGNBQ7Z5D8 188 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 SLC43A2Q8N370 569 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 SCAIQ8N9R8 606 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 OR10G2Q8NGC3 310 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 OR13C2Q8NGS9 318 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 LIPHQ8WWY8 451 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 HIST1H2ACQ93077 130 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 BDH2Q9BUT1 245 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 PDP1Q9P0J1 537 aaPredicted RBP18.9■□□□□ 0.62
VPS29-206ENST00000549578 B3GALT5Q9Y2C3 310 aa18.9■□□□□ 0.62
VPS29-206ENST00000549578 MAGED1Q9Y5V3 778 aaPredicted RBP18.9■□□□□ 0.62
VPS29-206ENST00000549578 RCBTB2O95199 551 aa18.89■□□□□ 0.61
VPS29-206ENST00000549578 IL2RAP01589 272 aa18.89■□□□□ 0.61
VPS29-206ENST00000549578 IFNGR2P38484 337 aa18.89■□□□□ 0.61
VPS29-206ENST00000549578 FOXF2Q12947 444 aa18.89■□□□□ 0.61
VPS29-206ENST00000549578 RNPS1Q15287 305 aaKnown RBP18.89■□□□□ 0.61
VPS29-206ENST00000549578 TMEM225Q6GV28 225 aa18.89■□□□□ 0.61
VPS29-206ENST00000549578 TMEM211Q6ICI0 200 aa18.89■□□□□ 0.61
VPS29-206ENST00000549578 GPAT4Q86UL3 456 aa18.89■□□□□ 0.61
VPS29-206ENST00000549578 MCEMP1Q8IX19 187 aa18.89■□□□□ 0.61
VPS29-206ENST00000549578 LINC00471Q8N535 108 aa18.89■□□□□ 0.61
VPS29-206ENST00000549578 AQP11Q8NBQ7 271 aa18.89■□□□□ 0.61
VPS29-206ENST00000549578 GIPC3Q8TF64 312 aa18.89■□□□□ 0.61
VPS29-206ENST00000549578 CENPNQ96H22 339 aaPredicted RBP18.89■□□□□ 0.61
VPS29-206ENST00000549578 PSD2Q9BQI7 771 aa18.89■□□□□ 0.61
VPS29-206ENST00000549578 ING1Q9UK53 422 aaPredicted RBP18.89■□□□□ 0.61
VPS29-206ENST00000549578 TRAV27A0A087WT01 109 aa18.88■□□□□ 0.61
VPS29-206ENST00000549578 A0A0G2JNJ9 132 aa18.88■□□□□ 0.61
VPS29-206ENST00000549578 ZNF716A6NP11 495 aa18.88■□□□□ 0.61
VPS29-206ENST00000549578 BLOC1S5-TXNDC5H3BN57 136 aa18.88■□□□□ 0.61
VPS29-206ENST00000549578 PLPP3O14495 311 aa18.88■□□□□ 0.61
VPS29-206ENST00000549578 KLF4O43474 513 aa18.88■□□□□ 0.61
VPS29-206ENST00000549578 HPRP00739 348 aa18.88■□□□□ 0.61
VPS29-206ENST00000549578 PLGP00747 810 aaPredicted RBP18.88■□□□□ 0.61
VPS29-206ENST00000549578 GASTP01350 101 aa18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms