RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 THAP7Q9BT49 309 aaPredicted RBP16.44■□□□□ 0.22
VIM-209ENST00000544301 RANGRFQ9HD47 186 aaPredicted RBP16.44■□□□□ 0.22
VIM-209ENST00000544301 FRG2CA6NGY1 282 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 C4orf47A7E2U8 309 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 CENPXA8MT69 81 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 SERPINI2O75830 405 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 GLCEO94923 617 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 DDAH2O95865 285 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 IGKV3-11P04433 115 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 UCHL1P09936 223 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 PSMB10P40306 273 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 OR1D5P58170 312 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 CCDC58Q4VC31 144 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 CEP78Q5JTW2 689 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 LINC01590Q5TEZ4 76 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 TMEM53Q6P2H8 277 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 FAM122BQ7Z309 247 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 GPR135Q8IZ08 494 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 TRIM63Q969Q1 353 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 ADIPOR1Q96A54 375 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 MARVELD1Q9BSK0 173 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.43■□□□□ 0.22
VIM-209ENST00000544301 MMP25Q9NPA2 562 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 NANSQ9NR45 359 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 DHCR7Q9UBM7 475 aaKnown RBP16.43■□□□□ 0.22
VIM-209ENST00000544301 NOTOA8MTQ0 251 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 FZD7O75084 574 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 GATBO75879 557 aaKnown RBP16.43■□□□□ 0.22
VIM-209ENST00000544301 ARL6IP5O75915 188 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 RPL6Q02878 288 aaKnown RBP16.43■□□□□ 0.22
VIM-209ENST00000544301 EGR4Q05215 589 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 UBXN2BQ14CS0 331 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 SYT9Q86SS6 491 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 PRR22Q8IZ63 422 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 OR5H6Q8NGV6 325 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 ZNF721Q8TF20 911 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 RFT1Q96AA3 541 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 MRPL48Q96GC5 212 aaKnown RBP16.43■□□□□ 0.22
VIM-209ENST00000544301 ADOQ96SZ5 270 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 PDCD1LG2Q9BQ51 273 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 ZCCHC4Q9H5U6 513 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 ALG5Q9Y673 324 aa16.43■□□□□ 0.22
VIM-209ENST00000544301 FAM171A2A8MVW0 826 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 FLRT2O43155 660 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 CD14P08571 375 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 EPXP11678 715 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 ATF1P18846 271 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 EFNA3P52797 238 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 HSF2Q03933 536 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 LTBQ06643 244 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 PRAMEF17Q5VTA0 474 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 JAZF1Q86VZ6 243 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 FYTTD1Q96QD9 318 aaKnown RBP16.42■□□□□ 0.22
VIM-209ENST00000544301 OR14A2Q96R54 314 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 ABHD1Q96SE0 405 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 SMAD5Q99717 465 aaKnown RBP16.42■□□□□ 0.22
VIM-209ENST00000544301 ALG12Q9BV10 488 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 PCED1AQ9H1Q7 454 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 RPRD1BQ9NQG5 326 aaKnown RBP16.42■□□□□ 0.22
VIM-209ENST00000544301 SLC6A5Q9Y345 797 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 LAMA1P25391 3075 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 RGS13O14921 159 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 ASAH2BP0C7U1 165 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 APEHP13798 732 aaKnown RBP16.42■□□□□ 0.22
VIM-209ENST00000544301 POU3F3P20264 500 aaPredicted RBP16.42■□□□□ 0.22
VIM-209ENST00000544301 SLC25A1P53007 311 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 CTXN1P60606 82 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 HSD11B2P80365 405 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 GPR176Q14439 515 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 ALG10Q5BKT4 473 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 PYHIN1Q6K0P9 492 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 UNQ9370/PRO34162Q6UXP9 181 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 SDR16C5Q8N3Y7 309 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 EXD3Q8N9H8 876 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 OR1L3Q8NH93 324 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 MVB12AQ96EY5 273 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 BEX2Q9BXY8 128 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 MFRPQ9BY79 579 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 RTN4RQ9BZR6 473 aa16.42■□□□□ 0.22
VIM-209ENST00000544301 TTYH1Q9H313 450 aaPredicted RBP16.42■□□□□ 0.22
VIM-209ENST00000544301 MRTO4Q9UKD2 239 aaKnown RBP16.42■□□□□ 0.22
VIM-209ENST00000544301 MPDZO75970 2070 aa16.41■□□□□ 0.22
VIM-209ENST00000544301 A0A1B0GVT2 93 aa16.41■□□□□ 0.22
VIM-209ENST00000544301 PRR32B1ATL7 298 aa16.41■□□□□ 0.22
VIM-209ENST00000544301 ICOSLGO75144 302 aa16.41■□□□□ 0.22
VIM-209ENST00000544301 SLC43A1O75387 559 aa16.41■□□□□ 0.22
VIM-209ENST00000544301 SNRPBP14678 240 aaKnown RBP16.41■□□□□ 0.22
VIM-209ENST00000544301 GRPRP30550 384 aa16.41■□□□□ 0.22
VIM-209ENST00000544301 UQCRC1P31930 480 aa16.41■□□□□ 0.22
VIM-209ENST00000544301 ARL4DP49703 201 aa16.41■□□□□ 0.22
VIM-209ENST00000544301 AGFG1P52594 562 aaKnown RBP16.41■□□□□ 0.22
VIM-209ENST00000544301 CD83Q01151 205 aa16.41■□□□□ 0.22
VIM-209ENST00000544301 CCDC85BQ15834 202 aaPredicted RBP16.41■□□□□ 0.22
VIM-209ENST00000544301 ASB18Q6ZVZ8 466 aa16.41■□□□□ 0.22
VIM-209ENST00000544301 OVCH1Q7RTY7 1134 aa16.41■□□□□ 0.22
VIM-209ENST00000544301 LSM14AQ8ND56 463 aaKnown RBP16.41■□□□□ 0.22
VIM-209ENST00000544301 C1orf216Q8TAB5 229 aa16.41■□□□□ 0.22
VIM-209ENST00000544301 RPS4Y2Q8TD47 263 aa16.41■□□□□ 0.22
VIM-209ENST00000544301 KTI12Q96EK9 354 aaPredicted RBP16.41■□□□□ 0.22
VIM-209ENST00000544301 RNF170Q96K19 258 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms