RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 TXNDC16Q9P2K2 825 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 ASH2LQ9UBL3 628 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 SEC14L4Q9UDX3 406 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 MALT1Q9UDY8 824 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 C19orf53Q9UNZ5 99 aaPredicted RBP4.07□□□□□ -1.76
LIMS1-214ENST00000542845 PCDHGB5Q9Y5G0 923 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 NOX1Q9Y5S8 564 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 TET2Q6N021 2002 aaPredicted RBP4.07□□□□□ -1.76
LIMS1-214ENST00000542845 BIRC6Q9NR09 4857 aa4.07□□□□□ -1.76
LIMS1-214ENST00000542845 PLXNB1O43157 2135 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 IGKV3D-15A0A087WSY6 115 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 A0A087WV62 115 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 A0A1W2PPW3 197 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 MYO1GB0I1T2 1018 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 H3BNH8 94 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 KIF2AO00139 706 aaPredicted RBP4.06□□□□□ -1.76
LIMS1-214ENST00000542845 OR7A17O14581 309 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 DHHO43323 396 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 PCDH7O60245 1069 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 NCR1O76036 304 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 KCNK2O95069 426 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 IGHV2-5P01817 119 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 PRPS2P11908 318 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 TSPAN8P19075 237 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 GATA3P23771 443 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 SDHAP31040 664 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 MAGEB1P43366 347 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 MTNR1BP49286 362 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 TRA2BP62995 288 aaKnown RBP4.06□□□□□ -1.76
LIMS1-214ENST00000542845 ROM1Q03395 351 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 MERTKQ12866 999 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 HSPB3Q12988 150 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 KIR3DS1Q14943 382 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 QPRTQ15274 297 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 PPP1R7Q15435 360 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 C2orf68Q2NKX9 166 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 PGS1Q32NB8 556 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 TBRG1Q3YBR2 411 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 VPS26BQ4G0F5 336 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 GKAP1Q5VSY0 366 aaPredicted RBP4.06□□□□□ -1.76
LIMS1-214ENST00000542845 REP15Q6BDI9 236 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 C3orf33Q6P1S2 294 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 RPS27LQ71UM5 84 aaKnown RBP4.06□□□□□ -1.76
LIMS1-214ENST00000542845 AAED1Q7RTV5 226 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 R3HCC1LQ7Z5L2 792 aaKnown RBP4.06□□□□□ -1.76
LIMS1-214ENST00000542845 CMC1Q7Z7K0 106 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 MISPQ8IVT2 679 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 PDIK1LQ8N165 341 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 ANKRD42Q8N9B4 389 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 NUP37Q8NFH4 326 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 OR4F6Q8NGB9 312 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 OR52E2Q8NGJ4 325 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 OR1K1Q8NGR3 316 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 PIGXQ8TBF5 258 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 C16orf78Q8WTQ4 265 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 UBTD2Q8WUN7 234 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 RAB1CQ92928 201 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 POP5Q969H6 163 aaKnown RBP4.06□□□□□ -1.76
LIMS1-214ENST00000542845 TRIM63Q969Q1 353 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 LRRC39Q96DD0 335 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 ELP4Q96EB1 424 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 PHF21BQ96EK2 531 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 UBXN10Q96LJ8 280 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 C16orf92Q96LL3 132 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 ATOH8Q96SQ7 321 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 LMF2Q9BU23 707 aaKnown RBP4.06□□□□□ -1.76
LIMS1-214ENST00000542845 MRI1Q9BV20 369 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 THUMPD3Q9BV44 507 aaKnown RBP4.06□□□□□ -1.76
LIMS1-214ENST00000542845 ADI1Q9BV57 179 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 EBPLQ9BY08 206 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 GLIPR2Q9H4G4 154 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 ZNF442Q9H7R0 627 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 MIEF1Q9NQG6 463 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 MMP26Q9NRE1 261 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 NMRK1Q9NWW6 199 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 MYEF2Q9P2K5 600 aaKnown RBP4.06□□□□□ -1.76
LIMS1-214ENST00000542845 ACOT9Q9Y305 439 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 WIPI2Q9Y4P8 454 aa4.06□□□□□ -1.76
LIMS1-214ENST00000542845 IGHV2OR16-5A0A0B4J2B6 119 aa4.05□□□□□ -1.76
LIMS1-214ENST00000542845 A0A1W2PQD3 144 aa4.05□□□□□ -1.76
LIMS1-214ENST00000542845 SYCE1LA8MT33 242 aa4.05□□□□□ -1.76
LIMS1-214ENST00000542845 CXorf49A8MYA2 514 aaPredicted RBP4.05□□□□□ -1.76
LIMS1-214ENST00000542845 TRAPPC2LH3BP13 241 aa4.05□□□□□ -1.76
LIMS1-214ENST00000542845 CLDN34H7C241 214 aa4.05□□□□□ -1.76
LIMS1-214ENST00000542845 PDLIM1O00151 329 aa4.05□□□□□ -1.76
LIMS1-214ENST00000542845 DNALI1O14645 258 aaPredicted RBP4.05□□□□□ -1.76
LIMS1-214ENST00000542845 FRS3O43559 492 aa4.05□□□□□ -1.76
LIMS1-214ENST00000542845 UGDHO60701 494 aa4.05□□□□□ -1.76
LIMS1-214ENST00000542845 SHOX2O60902 331 aaPredicted RBP4.05□□□□□ -1.76
LIMS1-214ENST00000542845 ERLIN1O75477 346 aa4.05□□□□□ -1.76
LIMS1-214ENST00000542845 NKX2-2O95096 273 aa4.05□□□□□ -1.76
LIMS1-214ENST00000542845 WISP3O95389 354 aaPredicted RBP4.05□□□□□ -1.76
LIMS1-214ENST00000542845 ANXA4P09525 319 aaPredicted RBP4.05□□□□□ -1.76
LIMS1-214ENST00000542845 ALOX5P09917 674 aa4.05□□□□□ -1.76
LIMS1-214ENST00000542845 IGHV4-38-2P0DP08 117 aa4.05□□□□□ -1.76
LIMS1-214ENST00000542845 ACP2P11117 423 aa4.05□□□□□ -1.76
LIMS1-214ENST00000542845 CHN1P15882 459 aa4.05□□□□□ -1.76
LIMS1-214ENST00000542845 ATP6V1C1P21283 382 aa4.05□□□□□ -1.76
LIMS1-214ENST00000542845 NTSP30990 170 aa4.05□□□□□ -1.76
LIMS1-214ENST00000542845 ALDH18A1P54886 795 aaKnown RBP4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms