RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 ZSWIM7Q19AV6 140 aa12.32□□□□□ -0.44
SNHG1-213ENST00000540725 SWI5Q1ZZU3 235 aa12.32□□□□□ -0.44
SNHG1-213ENST00000540725 MST1LQ2TV78 715 aa12.32□□□□□ -0.44
SNHG1-213ENST00000540725 TBRG1Q3YBR2 411 aa12.32□□□□□ -0.44
SNHG1-213ENST00000540725 GTDC1Q4AE62 458 aa12.32□□□□□ -0.44
SNHG1-213ENST00000540725 PRAMEF8Q5VWM4 474 aa12.32□□□□□ -0.44
SNHG1-213ENST00000540725 PRAMEF7Q5VXH5 474 aa12.32□□□□□ -0.44
SNHG1-213ENST00000540725 OR1K1Q8NGR3 316 aa12.32□□□□□ -0.44
SNHG1-213ENST00000540725 C3orf49Q96BT1 292 aa12.32□□□□□ -0.44
SNHG1-213ENST00000540725 TMEM19Q96HH6 336 aa12.32□□□□□ -0.44
SNHG1-213ENST00000540725 ALKBH3Q96Q83 286 aaPredicted RBP12.32□□□□□ -0.44
SNHG1-213ENST00000540725 SLC38A2Q96QD8 506 aa12.32□□□□□ -0.44
SNHG1-213ENST00000540725 KCNS3Q9BQ31 491 aa12.32□□□□□ -0.44
SNHG1-213ENST00000540725 TPT1P8Q9HAU6 139 aa12.32□□□□□ -0.44
SNHG1-213ENST00000540725 TMEM160Q9NX00 188 aa12.32□□□□□ -0.44
SNHG1-213ENST00000540725 A0A096LPI6 279 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 OR6C65A6NJZ3 312 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 TMEM229AB2RXF0 380 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 SLCO1B7G3V0H7 640 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 NPIPB7O75200 414 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 F12P00748 615 aaPredicted RBP12.31□□□□□ -0.44
SNHG1-213ENST00000540725 IGHV4-31P0DP07 118 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 ZNF16P17020 682 aaPredicted RBP12.31□□□□□ -0.44
SNHG1-213ENST00000540725 USF1P22415 310 aaPredicted RBP12.31□□□□□ -0.44
SNHG1-213ENST00000540725 PDLIM4P50479 330 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 CYB5R2Q6BCY4 276 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 NIPAL3Q6P499 406 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 MSANTD1Q6ZTZ1 278 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 CREB3L2Q70SY1 520 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 CROCCP2Q86T23 111 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 SERPINA11Q86U17 422 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 EPHX4Q8IUS5 362 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 MGARPQ8TDB4 240 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 STK35Q8TDR2 534 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 TMEM158Q8WZ71 300 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 ITCHQ96J02 903 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 MAELQ96JY0 434 aaKnown RBP12.31□□□□□ -0.44
SNHG1-213ENST00000540725 SORCS2Q96PQ0 1159 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 SPATA9Q9BWV2 254 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 RMND5AQ9H871 391 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 CACYBPQ9HB71 228 aaKnown RBP12.31□□□□□ -0.44
SNHG1-213ENST00000540725 ZIM2Q9NZV7 527 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 ZNF232Q9UNY5 417 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 RASD1Q9Y272 281 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 CHST2Q9Y4C5 530 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 FKBP7Q9Y680 259 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 SVEP1Q4LDE5 3571 aa12.31□□□□□ -0.44
SNHG1-213ENST00000540725 A0A0G2JPF8 293 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 TMEM120BA0PK00 339 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 TMEM247A6NEH6 219 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 HNRNPCL2B2RXH8 293 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 HNRNPCL3B7ZW38 293 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 PHF1O43189 567 aaPredicted RBP12.3□□□□□ -0.44
SNHG1-213ENST00000540725 ZNF500O60304 480 aaPredicted RBP12.3□□□□□ -0.44
SNHG1-213ENST00000540725 HNRNPCL1O60812 293 aaKnown RBP12.3□□□□□ -0.44
SNHG1-213ENST00000540725 UPK3AO75631 287 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 AHSA1O95433 338 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 CRYAAP02489 173 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 HNRNPCL4P0DMR1 293 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 UBE2NP61088 152 aaKnown RBP12.3□□□□□ -0.44
SNHG1-213ENST00000540725 SNRPD2P62316 118 aaKnown RBP12.3□□□□□ -0.44
SNHG1-213ENST00000540725 LSM11P83369 360 aaKnown RBP eCLIP12.3□□□□□ -0.441e-6■□□□□ 9.9
SNHG1-213ENST00000540725 SLC9B1Q4ZJI4 515 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 C6orf10Q5SRN2 563 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 ATG16L1Q676U5 607 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 LINGO2Q7L985 606 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 BCL2L2Q92843 193 aaPredicted RBP12.3□□□□□ -0.44
SNHG1-213ENST00000540725 VPS33AQ96AX1 596 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 KATNB1Q9BVA0 655 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 BEX2Q9BXY8 128 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 ARMC7Q9H6L4 198 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 SDR39U1Q9NRG7 319 aaPredicted RBP12.3□□□□□ -0.44
SNHG1-213ENST00000540725 THUMPD1Q9NXG2 353 aaKnown RBP12.3□□□□□ -0.44
SNHG1-213ENST00000540725 RAB21Q9UL25 225 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 IFT52Q9Y366 437 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 ARPC4-TTLL3A0A0A6YYG9 625 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 VWC2LB2RUY7 222 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 FTCDNL1E5RQL4 147 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 NR5A2O00482 541 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 PNMTP11086 282 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 PAX7P23759 505 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 SERPINF1P36955 418 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 GZMKP49863 264 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 POLR2JP52435 117 aaKnown RBP12.3□□□□□ -0.44
SNHG1-213ENST00000540725 TUBA1BP68363 451 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 TUBA4AP68366 448 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 GGTLC2Q14390 218 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 ZNF311Q5JNZ3 666 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 TUBA1AQ71U36 451 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 SLC46A3Q7Z3Q1 461 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 MAVSQ7Z434 540 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 OR9I1Q8NGQ6 314 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 MFSD8Q8NHS3 518 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 MAGEE2Q8TD90 523 aaPredicted RBP12.3□□□□□ -0.44
SNHG1-213ENST00000540725 SLC25A36Q96CQ1 311 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 ZNF317Q96PQ6 595 aaPredicted RBP12.3□□□□□ -0.44
SNHG1-213ENST00000540725 OR52B2Q96RD2 323 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 PIMREGQ9BSJ6 248 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 LINC00470Q9BZP3 86 aa12.3□□□□□ -0.44
SNHG1-213ENST00000540725 SHARPINQ9H0F6 387 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms