RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 KRT34O76011 436 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 VAMP5O95183 116 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 CD247P20963 164 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 HOXC12P31275 282 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 FOXD4Q12950 439 aaPredicted RBP13.02□□□□□ -0.33
USP28-204ENST00000537642 MAPRE2Q15555 327 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 NRF1Q16656 503 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 VMACQ2NL98 169 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 MMEL1Q495T6 779 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 C5orf46Q6UWT4 87 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 CREB3L2Q70SY1 520 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 AAED1Q7RTV5 226 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 PATL1Q86TB9 770 aaKnown RBP13.02□□□□□ -0.33
USP28-204ENST00000537642 P2RY8Q86VZ1 359 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 CALHM3Q86XJ0 350 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 EPHX4Q8IUS5 362 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 OR8J3Q8NGG0 315 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 OR4D11Q8NGI4 311 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 LILRB1Q8NHL6 650 aaPredicted RBP13.02□□□□□ -0.33
USP28-204ENST00000537642 IGFBPL1Q8WX77 278 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 AKAP1Q92667 903 aaKnown RBP eCLIP13.02□□□□□ -0.33
USP28-204ENST00000537642 PIGTQ969N2 578 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 TAMM41Q96BW9 452 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 MUCL1Q96DR8 90 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 SLC47A1Q96FL8 570 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 ESRP2Q9H6T0 727 aaKnown RBP13.02□□□□□ -0.33
USP28-204ENST00000537642 TMEM27Q9HBJ8 222 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 NPAP1Q9NZP6 1156 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 UPB1Q9UBR1 384 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 SEC14L4Q9UDX3 406 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 RASD1Q9Y272 281 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 RNF115Q9Y4L5 304 aa13.02□□□□□ -0.33
USP28-204ENST00000537642 USF3Q68DE3 2245 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 TRAV36DV7A0A075B6V5 113 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 OR2T1O43869 369 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 NPPAP01160 153 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 C8BP07358 591 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 CD3EP07766 207 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 CD99P14209 185 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 CRYBA2P53672 197 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 CDH12P55289 794 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 BSPH1Q075Z2 132 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 NPTX1Q15818 432 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 GABRA6Q16445 453 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 FAM69AQ5T7M9 428 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 INTS11Q5TA45 600 aaKnown RBP13.01□□□□□ -0.33
USP28-204ENST00000537642 C9orf135Q5VTT2 229 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 CCDC80Q76M96 950 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 RANBP3LQ86VV4 465 aaPredicted RBP13.01□□□□□ -0.33
USP28-204ENST00000537642 KDM8Q8N371 416 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 WFDC11Q8NEX6 87 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 OR6T1Q8NGN1 323 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 RNF217Q8TC41 542 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 NEUROG1Q92886 237 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 MUS81Q96NY9 551 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 MCHR1Q99705 422 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 SH3GL1Q99961 368 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 AMBRA1Q9C0C7 1298 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 SLCO5A1Q9H2Y9 848 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 SELENONQ9NZV5 590 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 ARMCX1Q9P291 453 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 USP22Q9UPT9 525 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 SLC25A15Q9Y619 301 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 CAPN7Q9Y6W3 813 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 ALPK2Q86TB3 2170 aa13.01□□□□□ -0.33
USP28-204ENST00000537642 A0A1W2PR80 420 aa13□□□□□ -0.33
USP28-204ENST00000537642 M0R082 166 aa13□□□□□ -0.33
USP28-204ENST00000537642 CLOCKO15516 846 aa13□□□□□ -0.33
USP28-204ENST00000537642 FMO6PO60774 539 aa13□□□□□ -0.33
USP28-204ENST00000537642 SMPD2O60906 423 aa13□□□□□ -0.33
USP28-204ENST00000537642 PTNP21246 168 aa13□□□□□ -0.33
USP28-204ENST00000537642 GTF2E2P29084 291 aaKnown RBP13□□□□□ -0.33
USP28-204ENST00000537642 GRPRP30550 384 aa13□□□□□ -0.33
USP28-204ENST00000537642 SELENOPP49908 381 aa13□□□□□ -0.33
USP28-204ENST00000537642 NKX6-1P78426 367 aaPredicted RBP13□□□□□ -0.33
USP28-204ENST00000537642 LGALS3BPQ08380 585 aa13□□□□□ -0.33
USP28-204ENST00000537642 ADAM5Q6NVV9 412 aa13□□□□□ -0.33
USP28-204ENST00000537642 SSX8Q7RTT4 187 aa13□□□□□ -0.33
USP28-204ENST00000537642 RBM45Q8IUH3 476 aaKnown RBP13□□□□□ -0.33
USP28-204ENST00000537642 LRRC75A-AS1Q8N1F1 130 aa13□□□□□ -0.33
USP28-204ENST00000537642 POU5F2Q8N7G0 328 aa13□□□□□ -0.33
USP28-204ENST00000537642 ZNF611Q8N823 705 aa13□□□□□ -0.33
USP28-204ENST00000537642 POMGNT2Q8NAT1 580 aa13□□□□□ -0.33
USP28-204ENST00000537642 OR52N5Q8NH56 324 aa13□□□□□ -0.33
USP28-204ENST00000537642 ZNF417Q8TAU3 575 aa13□□□□□ -0.33
USP28-204ENST00000537642 ZNF587Q96SQ5 575 aaPredicted RBP13□□□□□ -0.33
USP28-204ENST00000537642 ECSITQ9BQ95 431 aa13□□□□□ -0.33
USP28-204ENST00000537642 B3GAT1Q9P2W7 334 aa13□□□□□ -0.33
USP28-204ENST00000537642 HEATR1Q9H583 2144 aaKnown RBP13□□□□□ -0.33
USP28-204ENST00000537642 MTORP42345 2549 aa12.99□□□□□ -0.33
USP28-204ENST00000537642 PLCE1Q9P212 2302 aa12.99□□□□□ -0.33
USP28-204ENST00000537642 CPSF4LA6NMK7 179 aaKnown RBP12.99□□□□□ -0.33
USP28-204ENST00000537642 AIM2O14862 343 aa12.99□□□□□ -0.33
USP28-204ENST00000537642 SLC22A2O15244 555 aa12.99□□□□□ -0.33
USP28-204ENST00000537642 LYPD3O95274 346 aa12.99□□□□□ -0.33
USP28-204ENST00000537642 BGLAPP02818 100 aa12.99□□□□□ -0.33
USP28-204ENST00000537642 THY1P04216 161 aa12.99□□□□□ -0.33
USP28-204ENST00000537642 CBLP22681 906 aa12.99□□□□□ -0.33
USP28-204ENST00000537642 MPGP29372 298 aa12.99□□□□□ -0.33
USP28-204ENST00000537642 LTBQ06643 244 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms