RNA–Protein interactions for RNA: ENST00000531042.5

CPSF1-205, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-205ENST00000531042 YAE1D1Q9NRH1 226 aa13.8□□□□□ -0.2
CPSF1-205ENST00000531042 MXRA5Q9NR99 2828 aa13.8□□□□□ -0.2
CPSF1-205ENST00000531042 ATP6V1G2-DDX39BF2Z307 99 aa13.79□□□□□ -0.2
CPSF1-205ENST00000531042 CLIC1O00299 241 aa13.79□□□□□ -0.2
CPSF1-205ENST00000531042 GPRIN2O60269 458 aa13.79□□□□□ -0.2
CPSF1-205ENST00000531042 KRT33AO76009 404 aa13.79□□□□□ -0.2
CPSF1-205ENST00000531042 BMP2P12643 396 aa13.79□□□□□ -0.2
CPSF1-205ENST00000531042 SELENOPP49908 381 aa13.79□□□□□ -0.2
CPSF1-205ENST00000531042 PRAMEF8Q5VWM4 474 aa13.79□□□□□ -0.2
CPSF1-205ENST00000531042 PRAMEF7Q5VXH5 474 aa13.79□□□□□ -0.2
CPSF1-205ENST00000531042 SLC2A7Q6PXP3 512 aa13.79□□□□□ -0.2
CPSF1-205ENST00000531042 EPGNQ6UW88 154 aa13.79□□□□□ -0.2
CPSF1-205ENST00000531042 EPHX4Q8IUS5 362 aa13.79□□□□□ -0.2
CPSF1-205ENST00000531042 RAD21L1Q9H4I0 556 aa13.79□□□□□ -0.2
CPSF1-205ENST00000531042 A4GALTQ9NPC4 353 aa13.79□□□□□ -0.2
CPSF1-205ENST00000531042 OBP2BQ9NPH6 170 aa13.79□□□□□ -0.2
CPSF1-205ENST00000531042 TMEM45AQ9NWC5 275 aa13.79□□□□□ -0.2
CPSF1-205ENST00000531042 RASD1Q9Y272 281 aa13.79□□□□□ -0.2
CPSF1-205ENST00000531042 USH1CQ9Y6N9 552 aa13.79□□□□□ -0.2
CPSF1-205ENST00000531042 COL6A5A8TX70 2615 aa13.79□□□□□ -0.2
CPSF1-205ENST00000531042 ATRQ13535 2644 aa13.79□□□□□ -0.2
CPSF1-205ENST00000531042 CUBNO60494 3623 aa13.78□□□□□ -0.2
CPSF1-205ENST00000531042 ELOA3DA6NLF2 546 aaPredicted RBP13.78□□□□□ -0.2
CPSF1-205ENST00000531042 FTCDNL1E5RQL4 147 aa13.78□□□□□ -0.2
CPSF1-205ENST00000531042 AHSA1O95433 338 aa13.78□□□□□ -0.2
CPSF1-205ENST00000531042 LGI1O95970 557 aa13.78□□□□□ -0.2
CPSF1-205ENST00000531042 BMP4P12644 408 aa13.78□□□□□ -0.2
CPSF1-205ENST00000531042 HOXB9P17482 250 aaPredicted RBP13.78□□□□□ -0.2
CPSF1-205ENST00000531042 MRPL19P49406 292 aaKnown RBP13.78□□□□□ -0.2
CPSF1-205ENST00000531042 HOXC5Q00444 222 aa13.78□□□□□ -0.2
CPSF1-205ENST00000531042 EGR4Q05215 589 aa13.78□□□□□ -0.2
CPSF1-205ENST00000531042 CHRNB3Q05901 458 aa13.78□□□□□ -0.2
CPSF1-205ENST00000531042 LGALS3BPQ08380 585 aa13.78□□□□□ -0.2
CPSF1-205ENST00000531042 FADDQ13158 208 aa13.78□□□□□ -0.2
CPSF1-205ENST00000531042 ELOA3BQ3SY89 546 aa13.78□□□□□ -0.2
CPSF1-205ENST00000531042 TBRG1Q3YBR2 411 aa13.78□□□□□ -0.2
CPSF1-205ENST00000531042 HIPK1Q86Z02 1210 aa13.78□□□□□ -0.2
CPSF1-205ENST00000531042 ZNF525Q8N782 197 aa13.78□□□□□ -0.2
CPSF1-205ENST00000531042 ELOA3Q8NG57 546 aa13.78□□□□□ -0.2
CPSF1-205ENST00000531042 OR1K1Q8NGR3 316 aa13.78□□□□□ -0.2
CPSF1-205ENST00000531042 MFSD8Q8NHS3 518 aa13.78□□□□□ -0.2
CPSF1-205ENST00000531042 BBS10Q8TAM1 723 aa13.78□□□□□ -0.2
CPSF1-205ENST00000531042 MAL2Q969L2 176 aa13.78□□□□□ -0.2
CPSF1-205ENST00000531042 SLC35B4Q969S0 331 aa13.78□□□□□ -0.2
CPSF1-205ENST00000531042 MOKQ9UQ07 419 aa13.78□□□□□ -0.2
CPSF1-205ENST00000531042 PMF1-BGLAPU3KQ54 211 aa13.78□□□□□ -0.2
CPSF1-205ENST00000531042 YLPM1P49750 1951 aaKnown RBP13.78□□□□□ -0.2
CPSF1-205ENST00000531042 IGHV1-18A0A0C4DH31 117 aa13.77□□□□□ -0.21
CPSF1-205ENST00000531042 OR6C65A6NJZ3 312 aa13.77□□□□□ -0.21
CPSF1-205ENST00000531042 ZNF587BE7ETH6 402 aa13.77□□□□□ -0.21
CPSF1-205ENST00000531042 SLC25A16P16260 332 aa13.77□□□□□ -0.21
CPSF1-205ENST00000531042 RPS5P46782 204 aaKnown RBP13.77□□□□□ -0.21
CPSF1-205ENST00000531042 EFNA4P52798 201 aa13.77□□□□□ -0.21
CPSF1-205ENST00000531042 LOXL1Q08397 574 aaPredicted RBP13.77□□□□□ -0.21
CPSF1-205ENST00000531042 NIPAL3Q6P499 406 aa13.77□□□□□ -0.21
CPSF1-205ENST00000531042 LINGO2Q7L985 606 aa13.77□□□□□ -0.21
CPSF1-205ENST00000531042 CXXC5Q7LFL8 322 aaKnown RBP13.77□□□□□ -0.21
CPSF1-205ENST00000531042 KDM8Q8N371 416 aa13.77□□□□□ -0.21
CPSF1-205ENST00000531042 GOLGA6L1Q8N7Z2 621 aa13.77□□□□□ -0.21
CPSF1-205ENST00000531042 FAM168AQ92567 244 aa13.77□□□□□ -0.21
CPSF1-205ENST00000531042 BCL2L2Q92843 193 aaPredicted RBP13.77□□□□□ -0.21
CPSF1-205ENST00000531042 SLC25A36Q96CQ1 311 aa13.77□□□□□ -0.21
CPSF1-205ENST00000531042 ALKBH3Q96Q83 286 aaPredicted RBP13.77□□□□□ -0.21
CPSF1-205ENST00000531042 SLC38A2Q96QD8 506 aa13.77□□□□□ -0.21
CPSF1-205ENST00000531042 TNFRSF13CQ96RJ3 184 aa13.77□□□□□ -0.21
CPSF1-205ENST00000531042 PTDSS2Q9BVG9 487 aa13.77□□□□□ -0.21
CPSF1-205ENST00000531042 RSPO3Q9BXY4 272 aaPredicted RBP13.77□□□□□ -0.21
CPSF1-205ENST00000531042 LINC00470Q9BZP3 86 aa13.77□□□□□ -0.21
CPSF1-205ENST00000531042 SLC25A37Q9NYZ2 338 aa13.77□□□□□ -0.21
CPSF1-205ENST00000531042 A8MV72 311 aaPredicted RBP13.76□□□□□ -0.21
CPSF1-205ENST00000531042 C5orf58C9J3I9 102 aa13.76□□□□□ -0.21
CPSF1-205ENST00000531042 ERLIN1O75477 346 aa13.76□□□□□ -0.21
CPSF1-205ENST00000531042 UPK3AO75631 287 aa13.76□□□□□ -0.21
CPSF1-205ENST00000531042 PNMTP11086 282 aa13.76□□□□□ -0.21
CPSF1-205ENST00000531042 ETS2P15036 469 aa13.76□□□□□ -0.21
CPSF1-205ENST00000531042 PAX7P23759 505 aa13.76□□□□□ -0.21
CPSF1-205ENST00000531042 SWI5Q1ZZU3 235 aa13.76□□□□□ -0.21
CPSF1-205ENST00000531042 MST1LQ2TV78 715 aa13.76□□□□□ -0.21
CPSF1-205ENST00000531042 TMEM249Q2WGJ8 235 aa13.76□□□□□ -0.21
CPSF1-205ENST00000531042 BEND6Q5SZJ8 279 aaPredicted RBP13.76□□□□□ -0.21
CPSF1-205ENST00000531042 LRIF1Q5T3J3 769 aa13.76□□□□□ -0.21
CPSF1-205ENST00000531042 HMBOX1Q6NT76 420 aa13.76□□□□□ -0.21
CPSF1-205ENST00000531042 C6orf89Q6UWU4 347 aa13.76□□□□□ -0.21
CPSF1-205ENST00000531042 FUNDC1Q8IVP5 155 aa13.76□□□□□ -0.21
CPSF1-205ENST00000531042 C10orf105Q8TEF2 133 aa13.76□□□□□ -0.21
CPSF1-205ENST00000531042 KTI12Q96EK9 354 aaPredicted RBP13.76□□□□□ -0.21
CPSF1-205ENST00000531042 C7orf26Q96N11 449 aa13.76□□□□□ -0.21
CPSF1-205ENST00000531042 C12orf10Q9HB07 376 aa13.76□□□□□ -0.21
CPSF1-205ENST00000531042 TCF7L2Q9NQB0 619 aa13.76□□□□□ -0.21
CPSF1-205ENST00000531042 ARFGEF3Q5TH69 2177 aa13.75□□□□□ -0.21
CPSF1-205ENST00000531042 ARPC4-TTLL3A0A0A6YYG9 625 aa13.75□□□□□ -0.21
CPSF1-205ENST00000531042 NR5A2O00482 541 aa13.75□□□□□ -0.21
CPSF1-205ENST00000531042 FZD7O75084 574 aa13.75□□□□□ -0.21
CPSF1-205ENST00000531042 ZNF432O94892 652 aa13.75□□□□□ -0.21
CPSF1-205ENST00000531042 TGDSO95455 350 aa13.75□□□□□ -0.21
CPSF1-205ENST00000531042 F12P00748 615 aaPredicted RBP13.75□□□□□ -0.21
CPSF1-205ENST00000531042 GTF2E2P29084 291 aaKnown RBP13.75□□□□□ -0.21
CPSF1-205ENST00000531042 PRKAR1BP31321 381 aa13.75□□□□□ -0.21
CPSF1-205ENST00000531042 CLDN17P56750 224 aa13.75□□□□□ -0.21
CPSF1-205ENST00000531042 UBE2NP61088 152 aaKnown RBP13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms