RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 BEX4Q9NWD9 120 aaPredicted RBP9.36□□□□□ -0.91
CD44-227ENST00000528086 EMC3Q9P0I2 261 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 ARMCX1Q9P291 453 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 KLHL14Q9P2G3 628 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 TRIM33Q9UPN9 1127 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 RTTNQ86VV8 2226 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 TLN2Q9Y4G6 2542 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 CR1P17927 2039 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 FN1P02751 2386 aaKnown RBP9.35□□□□□ -0.91
CD44-227ENST00000528086 A0A087WUJ7 227 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 EVPLLA8MZ36 301 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 MS4A18H0YCH9 400 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 OVOL3O00110 214 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 GPR171O14626 319 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 HS3ST1O14792 307 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 ANGPT2O15123 496 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 TRAF3IP2O43734 574 aaPredicted RBP9.35□□□□□ -0.91
CD44-227ENST00000528086 MRPL33O75394 65 aaKnown RBP9.35□□□□□ -0.91
CD44-227ENST00000528086 UPK3AO75631 287 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 CD8AP01732 235 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 BGLAPP02818 100 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 HLA-DOBP13765 273 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 TNFRSF1BP20333 461 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 IL32P24001 234 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 RBBP4Q09028 425 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 VMACQ2NL98 169 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 MS4A18Q3C1V0 323 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 TIMM23BQ5SRD1 257 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 PHYHD1Q5SRE7 291 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 C8orf82Q6P1X6 216 aaPredicted RBP9.35□□□□□ -0.91
CD44-227ENST00000528086 CASP12Q6UXS9 341 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 B3GLCTQ6Y288 498 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 CCDC80Q76M96 950 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 ARMC8Q8IUR7 673 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 POU5F2Q8N7G0 328 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 ZNF611Q8N823 705 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 ZHX1-C8orf76Q96EF9 292 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 SLC41A3Q96GZ6 507 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 SMR3AQ99954 134 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 PRSS27Q9BQR3 290 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 SF3B5Q9BWJ5 86 aaKnown RBP9.35□□□□□ -0.91
CD44-227ENST00000528086 ZNF701Q9NV72 531 aaPredicted RBP9.35□□□□□ -0.91
CD44-227ENST00000528086 CMTM6Q9NX76 183 aa9.35□□□□□ -0.91
CD44-227ENST00000528086 UQCRHLA0A096LP55 91 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 LOC100653049A0A140TA62 436 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 TMEM247A6NEH6 219 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 ZNF503-AS2A6NEH8 195 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 CCT8L1PA6NM43 557 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 M0R082 166 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 KRT34O76011 436 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 VIMP08670 466 aaKnown RBP9.34□□□□□ -0.91
CD44-227ENST00000528086 CD99P14209 185 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 UQCRBP14927 111 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 PAX1P15863 534 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 GGT1P19440 569 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 CBLP22681 906 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 GRPRP30550 384 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 RGS8P57771 180 aaPredicted RBP9.34□□□□□ -0.91
CD44-227ENST00000528086 COPZ1P61923 177 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 NKX6-1P78426 367 aaPredicted RBP9.34□□□□□ -0.91
CD44-227ENST00000528086 PPA1Q15181 289 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 STK11Q15831 433 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 CYP51A1Q16850 503 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 COQ5Q5HYK3 327 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 ALG10BQ5I7T1 473 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 FAM91A1Q658Y4 838 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 KRT73Q86Y46 540 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 TMEM123Q8N131 208 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 UBE2J2Q8N2K1 259 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 OR52N5Q8NH56 324 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 ZNF417Q8TAU3 575 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 SLC25A36Q96CQ1 311 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 BOD1Q96IK1 185 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 ZNF587Q96SQ5 575 aaPredicted RBP9.34□□□□□ -0.91
CD44-227ENST00000528086 NAA11Q9BSU3 229 aaPredicted RBP9.34□□□□□ -0.91
CD44-227ENST00000528086 ZNF426Q9BUY5 554 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 C1QTNF6Q9BXI9 259 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 PCDHAC1Q9H158 963 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 ASB6Q9NWX5 421 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 TAS2R16Q9NYV7 291 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 TESQ9UGI8 421 aaKnown RBP9.34□□□□□ -0.91
CD44-227ENST00000528086 CORO2BQ9UQ03 480 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 ANGPT4Q9Y264 503 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 SLC9A8Q9Y2E8 581 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 RNF115Q9Y4L5 304 aa9.34□□□□□ -0.91
CD44-227ENST00000528086 NSD1Q96L73 2696 aaPredicted RBP9.34□□□□□ -0.91
CD44-227ENST00000528086 YLPM1P49750 1951 aaKnown RBP9.33□□□□□ -0.92
CD44-227ENST00000528086 CHD3Q12873 2000 aaKnown RBP9.33□□□□□ -0.92
CD44-227ENST00000528086 LOC102725191A0A1B0GVB3 256 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 ELOA3DA6NLF2 546 aaPredicted RBP9.33□□□□□ -0.92
CD44-227ENST00000528086 E7EQL1 145 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 MRASO14807 208 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 NDUFS7O75251 213 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 AHSA1O95433 338 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 TROVE2P10155 538 aaKnown RBP eCLIP9.33□□□□□ -0.92
CD44-227ENST00000528086 SEC24CP53992 1094 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 NR1H2P55055 460 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 LSM11P83369 360 aaKnown RBP eCLIP9.33□□□□□ -0.92
CD44-227ENST00000528086 ELOA3BQ3SY89 546 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 ZNF672Q499Z4 452 aaPredicted RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms