RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 ACBD4Q8NC06 268 aa12.69□□□□□ -0.38
NUP54-216ENST00000514901 ADPRHL1Q8NDY3 354 aa12.69□□□□□ -0.38
NUP54-216ENST00000514901 ASB9Q96DX5 294 aa12.69□□□□□ -0.38
NUP54-216ENST00000514901 PRSS27Q9BQR3 290 aa12.69□□□□□ -0.38
NUP54-216ENST00000514901 ASPNQ9BXN1 380 aa12.69□□□□□ -0.38
NUP54-216ENST00000514901 NPDC1Q9NQX5 325 aaPredicted RBP12.69□□□□□ -0.38
NUP54-216ENST00000514901 PARPBPQ9NWS1 579 aa12.69□□□□□ -0.38
NUP54-216ENST00000514901 C6orf203Q9P0P8 240 aaPredicted RBP12.69□□□□□ -0.38
NUP54-216ENST00000514901 CENPEQ02224 2701 aa12.68□□□□□ -0.38
NUP54-216ENST00000514901 LOC102725191A0A1B0GVB3 256 aa12.68□□□□□ -0.38
NUP54-216ENST00000514901 ZNF814B7Z6K7 855 aa12.68□□□□□ -0.38
NUP54-216ENST00000514901 C19orf84I3L1E1 186 aa12.68□□□□□ -0.38
NUP54-216ENST00000514901 PDE5AO76074 875 aa12.68□□□□□ -0.38
NUP54-216ENST00000514901 CNOT4O95628 575 aaKnown RBP12.68□□□□□ -0.38
NUP54-216ENST00000514901 BGLAPP02818 100 aa12.68□□□□□ -0.38
NUP54-216ENST00000514901 COX6B1P14854 86 aa12.68□□□□□ -0.38
NUP54-216ENST00000514901 IGFBP2P18065 325 aa12.68□□□□□ -0.38
NUP54-216ENST00000514901 KLK2P20151 261 aa12.68□□□□□ -0.38
NUP54-216ENST00000514901 GRPRP30550 384 aa12.68□□□□□ -0.38
NUP54-216ENST00000514901 P2RY4P51582 365 aa12.68□□□□□ -0.38
NUP54-216ENST00000514901 SORDQ00796 357 aa12.68□□□□□ -0.38
NUP54-216ENST00000514901 TRAM2Q15035 370 aa12.68□□□□□ -0.38
NUP54-216ENST00000514901 POU4F3Q15319 338 aa12.68□□□□□ -0.38
NUP54-216ENST00000514901 LCN8Q6JVE9 175 aa12.68□□□□□ -0.38
NUP54-216ENST00000514901 ZNF474Q6S9Z5 364 aaPredicted RBP12.68□□□□□ -0.38
NUP54-216ENST00000514901 P3H2Q8IVL5 708 aa12.68□□□□□ -0.38
NUP54-216ENST00000514901 TMEM239Q8WW34 195 aa12.68□□□□□ -0.38
NUP54-216ENST00000514901 C7orf34Q96L11 122 aa12.68□□□□□ -0.38
NUP54-216ENST00000514901 ZNF300Q96RE9 604 aaPredicted RBP12.68□□□□□ -0.38
NUP54-216ENST00000514901 TRIM15Q9C019 465 aa12.68□□□□□ -0.38
NUP54-216ENST00000514901 OPN3Q9H1Y3 402 aaPredicted RBP12.68□□□□□ -0.38
NUP54-216ENST00000514901 ANKRD19PQ9H560 264 aa12.68□□□□□ -0.38
NUP54-216ENST00000514901 MRPL39Q9NYK5 338 aaKnown RBP12.68□□□□□ -0.38
NUP54-216ENST00000514901 NDUFAF4Q9P032 175 aa12.68□□□□□ -0.38
NUP54-216ENST00000514901 NOSIPQ9Y314 301 aaKnown RBP12.68□□□□□ -0.38
NUP54-216ENST00000514901 MED31Q9Y3C7 131 aa12.68□□□□□ -0.38
NUP54-216ENST00000514901 FREM1Q5H8C1 2179 aa12.68□□□□□ -0.38
NUP54-216ENST00000514901 FFAR1O14842 300 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 HNRNPRO43390 633 aaKnown RBP12.67□□□□□ -0.38
NUP54-216ENST00000514901 RAMP1O60894 148 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 MRPL33O75394 65 aaKnown RBP12.67□□□□□ -0.38
NUP54-216ENST00000514901 MT-ND1P03886 318 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 HIST1H2ABP04908 130 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 CD79BP40259 229 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 YAP1P46937 504 aaKnown RBP12.67□□□□□ -0.38
NUP54-216ENST00000514901 OR3A2P47893 321 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 SMIM11AP58511 58 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 MS4A2Q01362 244 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 ZNF74Q16587 644 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 PGM2L1Q6PCE3 622 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 CYP2R1Q6VVX0 501 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 MEX3BQ6ZN04 569 aaKnown RBP12.67□□□□□ -0.38
NUP54-216ENST00000514901 HIST3H2AQ7L7L0 130 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 NUFIP2Q7Z417 695 aaKnown RBP12.67□□□□□ -0.38
NUP54-216ENST00000514901 GPAT4Q86UL3 456 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 NKAIN4Q8IVV8 208 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 DMRTC2Q8IXT2 367 aaPredicted RBP12.67□□□□□ -0.38
NUP54-216ENST00000514901 ZNF100Q8IYN0 542 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 RNF113BQ8IZP6 322 aaKnown RBP12.67□□□□□ -0.38
NUP54-216ENST00000514901 PIK3C3Q8NEB9 887 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 OR9K2Q8NGE7 335 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 HIST1H2ACQ93077 130 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 TMEM45BQ96B21 275 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 LRGUKQ96M69 825 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 OXGR1Q96P68 337 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 ZNF347Q96SE7 839 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 MMADHCQ9H3L0 296 aaPredicted RBP12.67□□□□□ -0.38
NUP54-216ENST00000514901 C12orf49Q9H741 205 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 FKRPQ9H9S5 495 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 NMNAT1Q9HAN9 279 aaPredicted RBP12.67□□□□□ -0.38
NUP54-216ENST00000514901 NANSQ9NR45 359 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 GALNT8Q9NY28 637 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 ZNF229Q9UJW7 825 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 FLVCR1Q9Y5Y0 555 aa12.67□□□□□ -0.38
NUP54-216ENST00000514901 ALPK2Q86TB3 2170 aa12.66□□□□□ -0.38
NUP54-216ENST00000514901 A0A1W2PRQ8 180 aa12.66□□□□□ -0.38
NUP54-216ENST00000514901 J3KTA2 159 aa12.66□□□□□ -0.38
NUP54-216ENST00000514901 M0R082 166 aa12.66□□□□□ -0.38
NUP54-216ENST00000514901 GSC2O15499 205 aa12.66□□□□□ -0.38
NUP54-216ENST00000514901 PRSS23O95084 383 aa12.66□□□□□ -0.38
NUP54-216ENST00000514901 CH25HO95992 272 aa12.66□□□□□ -0.38
NUP54-216ENST00000514901 SEMG1P04279 462 aa12.66□□□□□ -0.38
NUP54-216ENST00000514901 H1F0P07305 194 aaKnown RBP12.66□□□□□ -0.38
NUP54-216ENST00000514901 POU2F1P14859 743 aa12.66□□□□□ -0.38
NUP54-216ENST00000514901 NQO1P15559 274 aaKnown RBP12.66□□□□□ -0.38
NUP54-216ENST00000514901 ZNF43P17038 809 aa12.66□□□□□ -0.38
NUP54-216ENST00000514901 HOXB6P17509 224 aaKnown RBP12.66□□□□□ -0.38
NUP54-216ENST00000514901 COL8A1P27658 744 aa12.66□□□□□ -0.38
NUP54-216ENST00000514901 LTBQ06643 244 aa12.66□□□□□ -0.38
NUP54-216ENST00000514901 PMS2P3Q13401 168 aa12.66□□□□□ -0.38
NUP54-216ENST00000514901 DGCR6Q14129 220 aa12.66□□□□□ -0.38
NUP54-216ENST00000514901 TFAP2EQ6VUC0 442 aa12.66□□□□□ -0.38
NUP54-216ENST00000514901 FAM86B1Q8N7N1 296 aa12.66□□□□□ -0.38
NUP54-216ENST00000514901 OR5J2Q8NH18 312 aa12.66□□□□□ -0.38
NUP54-216ENST00000514901 ZNF417Q8TAU3 575 aa12.66□□□□□ -0.38
NUP54-216ENST00000514901 TMEM255BQ8WV15 326 aa12.66□□□□□ -0.38
NUP54-216ENST00000514901 ACOT11Q8WXI4 607 aaPredicted RBP12.66□□□□□ -0.38
NUP54-216ENST00000514901 APH1AQ96BI3 265 aa12.66□□□□□ -0.38
NUP54-216ENST00000514901 ZNF775Q96BV0 537 aaPredicted RBP12.66□□□□□ -0.38
NUP54-216ENST00000514901 CCDC124Q96CT7 223 aaKnown RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms