RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 LTBQ06643 244 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 RASGEF1BQ0VAM2 473 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 LAPTM4AQ15012 233 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 ZNF74Q16587 644 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 GTF2IRD2BQ6EKJ0 949 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 TMEM225Q6GV28 225 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 PAQR6Q6TCH4 344 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 SEM1Q6ZVN7 128 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 NANOGNBQ7Z5D8 188 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 GPAT4Q86UL3 456 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 GTF2IRD2Q86UP8 949 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 CCDC103Q8IW40 242 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 RNF113BQ8IZP6 322 aaKnown RBP13.37□□□□□ -0.27
NUP54-213ENST00000513352 SLC43A2Q8N370 569 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 MARVELD2Q8N4S9 558 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 OR6S1Q8NH40 331 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 MBD3L2Q8NHZ7 208 aaPredicted RBP13.37□□□□□ -0.27
NUP54-213ENST00000513352 RNF128Q8TEB7 428 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 INTS12Q96CB8 462 aaKnown RBP13.37□□□□□ -0.27
NUP54-213ENST00000513352 DUS3LQ96G46 650 aaKnown RBP13.37□□□□□ -0.27
NUP54-213ENST00000513352 FAM46AQ96IP4 442 aaKnown RBP13.37□□□□□ -0.27
NUP54-213ENST00000513352 DMRTA2Q96SC8 542 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 FKRPQ9H9S5 495 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 CHST11Q9NPF2 352 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 SEC14L4Q9UDX3 406 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 SLC5A6Q9Y289 635 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 TMEM5Q9Y2B1 443 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 CORINQ9Y5Q5 1042 aa13.37□□□□□ -0.27
NUP54-213ENST00000513352 PCNX1Q96RV3 2341 aa13.36□□□□□ -0.27
NUP54-213ENST00000513352 AQP7P3A6NL99 342 aa13.36□□□□□ -0.27
NUP54-213ENST00000513352 EFCAB9A8MZ26 197 aa13.36□□□□□ -0.27
NUP54-213ENST00000513352 ZNF814B7Z6K7 855 aa13.36□□□□□ -0.27
NUP54-213ENST00000513352 CYTIPO60759 359 aa13.36□□□□□ -0.27
NUP54-213ENST00000513352 OR6A2O95222 327 aa13.36□□□□□ -0.27
NUP54-213ENST00000513352 FUT1P19526 365 aa13.36□□□□□ -0.27
NUP54-213ENST00000513352 MAKP20794 623 aa13.36□□□□□ -0.27
NUP54-213ENST00000513352 IFNGR2P38484 337 aa13.36□□□□□ -0.27
NUP54-213ENST00000513352 AGFG1P52594 562 aaKnown RBP13.36□□□□□ -0.27
NUP54-213ENST00000513352 IST1P53990 364 aa13.36□□□□□ -0.27
NUP54-213ENST00000513352 PRKCDQ05655 676 aa13.36□□□□□ -0.27
NUP54-213ENST00000513352 RNPS1Q15287 305 aaKnown RBP13.36□□□□□ -0.27
NUP54-213ENST00000513352 RIPPLY2Q5TAB7 128 aa13.36□□□□□ -0.27
NUP54-213ENST00000513352 OR2A2Q6IF42 318 aa13.36□□□□□ -0.27
NUP54-213ENST00000513352 MTFR2Q6P444 385 aa13.36□□□□□ -0.27
NUP54-213ENST00000513352 H1FNTQ75WM6 255 aaPredicted RBP13.36□□□□□ -0.27
NUP54-213ENST00000513352 SLC46A3Q7Z3Q1 461 aa13.36□□□□□ -0.27
NUP54-213ENST00000513352 AMIGO2Q86SJ2 522 aa13.36□□□□□ -0.27
NUP54-213ENST00000513352 LRRC17Q8N6Y2 441 aa13.36□□□□□ -0.27
NUP54-213ENST00000513352 CNEP1R1Q8N9A8 125 aa13.36□□□□□ -0.27
NUP54-213ENST00000513352 OR9Q2Q8NGE9 314 aa13.36□□□□□ -0.27
NUP54-213ENST00000513352 OR5J2Q8NH18 312 aa13.36□□□□□ -0.27
NUP54-213ENST00000513352 LRTOMTQ8WZ04 291 aa13.36□□□□□ -0.27
NUP54-213ENST00000513352 CCDC120Q96HB5 630 aa13.36□□□□□ -0.27
NUP54-213ENST00000513352 KLHL9Q9P2J3 617 aa13.36□□□□□ -0.27
NUP54-213ENST00000513352 ZNF229Q9UJW7 825 aa13.36□□□□□ -0.27
NUP54-213ENST00000513352 C11orf98E9PRG8 122 aa13.35□□□□□ -0.27
NUP54-213ENST00000513352 BLOC1S5-TXNDC5H3BN57 136 aa13.35□□□□□ -0.27
NUP54-213ENST00000513352 RAMP1O60894 148 aa13.35□□□□□ -0.27
NUP54-213ENST00000513352 SERPINI2O75830 405 aa13.35□□□□□ -0.27
NUP54-213ENST00000513352 ADORA3P0DMS8 318 aa13.35□□□□□ -0.27
NUP54-213ENST00000513352 AHCYP23526 432 aa13.35□□□□□ -0.27
NUP54-213ENST00000513352 DNAJA1P31689 397 aaKnown RBP13.35□□□□□ -0.27
NUP54-213ENST00000513352 TIMP3P35625 211 aa13.35□□□□□ -0.27
NUP54-213ENST00000513352 C1DQ13901 141 aaKnown RBP13.35□□□□□ -0.27
NUP54-213ENST00000513352 ATP6AP1Q15904 470 aa13.35□□□□□ -0.27
NUP54-213ENST00000513352 ABLIM2Q6H8Q1 611 aa13.35□□□□□ -0.27
NUP54-213ENST00000513352 CCDC71Q8IV32 467 aaPredicted RBP13.35□□□□□ -0.27
NUP54-213ENST00000513352 OR4C15Q8NGM1 316 aa13.35□□□□□ -0.27
NUP54-213ENST00000513352 OR13C2Q8NGS9 318 aa13.35□□□□□ -0.27
NUP54-213ENST00000513352 ZNF775Q96BV0 537 aaPredicted RBP13.35□□□□□ -0.27
NUP54-213ENST00000513352 FUZQ9BT04 418 aa13.35□□□□□ -0.27
NUP54-213ENST00000513352 BDH2Q9BUT1 245 aa13.35□□□□□ -0.27
NUP54-213ENST00000513352 SEMA6AQ9H2E6 1030 aa13.35□□□□□ -0.27
NUP54-213ENST00000513352 RNF122Q9H9V4 155 aa13.35□□□□□ -0.27
NUP54-213ENST00000513352 S100A14Q9HCY8 104 aa13.35□□□□□ -0.27
NUP54-213ENST00000513352 MRPL39Q9NYK5 338 aaKnown RBP13.35□□□□□ -0.27
NUP54-213ENST00000513352 COQ3Q9NZJ6 369 aa13.35□□□□□ -0.27
NUP54-213ENST00000513352 EMC3Q9P0I2 261 aa13.35□□□□□ -0.27
NUP54-213ENST00000513352 RASD1Q9Y272 281 aa13.35□□□□□ -0.27
NUP54-213ENST00000513352 EMC9Q9Y3B6 208 aa13.35□□□□□ -0.27
NUP54-213ENST00000513352 INTS1Q8N201 2190 aaKnown RBP13.35□□□□□ -0.27
NUP54-213ENST00000513352 TRAV27A0A087WT01 109 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 A0A0G2JNJ9 132 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 HTR3EA5X5Y0 456 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 HSPB2A8KAH6 182 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 H0YHG0 523 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 RNF13O43567 381 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 TOXO94900 526 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 AGFG2O95081 481 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 RCBTB2O95199 551 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 BAG2O95816 211 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 IGF2P01344 180 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 LIMS1P48059 325 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 ARHGDIAP52565 204 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 SMSP52788 366 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 HMGA2P52926 109 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 HSPB2Q16082 182 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 MICAQ29983 383 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 TMEM201Q5SNT2 666 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 OAFQ86UD1 273 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 120.7 ms