RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 CYB5BO43169 146 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 PCSK6P29122 969 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 IL2RGP31785 369 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 CAMLGP49069 296 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 CSNK1G2P78368 415 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 EMX1Q04741 257 aaPredicted RBP12.19□□□□□ -0.46
PTPRF-215ENST00000496447 LILRA3Q8N6C8 439 aaPredicted RBP12.19□□□□□ -0.46
PTPRF-215ENST00000496447 L3MBTL4Q8NA19 623 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 STEAP2Q8NFT2 490 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 PSMF1Q92530 271 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 NT5C3BQ969T7 300 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 FOXQ1Q9C009 403 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 QRSL1Q9H0R6 528 aaKnown RBP12.19□□□□□ -0.46
PTPRF-215ENST00000496447 MED16Q9Y2X0 877 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 TRAV36DV7A0A075B6V5 113 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 NAP1L6A6NFF2 107 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 ZNF780AO75290 641 aaPredicted RBP12.19□□□□□ -0.46
PTPRF-215ENST00000496447 CAPNS1P04632 268 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 EXOSC6Q5RKV6 272 aaKnown RBP12.19□□□□□ -0.46
PTPRF-215ENST00000496447 SBSNQ6UWP8 590 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 PLPP6Q8IY26 295 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 LINC01465Q8N7H1 131 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 TBX21Q9UL17 535 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 ITGB2P05107 769 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 ALDOCP09972 364 aaKnown RBP12.19□□□□□ -0.46
PTPRF-215ENST00000496447 TACR1P25103 407 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 SEMA3BQ13214 749 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 ZNF684Q5T5D7 378 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 HENMT1Q5T8I9 393 aaKnown RBP12.19□□□□□ -0.46
PTPRF-215ENST00000496447 RETREG3Q86VR2 466 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 TMEM185AQ8NFB2 350 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 TERB2Q8NHR7 220 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 RBPMSQ93062 196 aaKnown RBP12.19□□□□□ -0.46
PTPRF-215ENST00000496447 ZNF681Q96N22 645 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 OR2M2Q96R28 347 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 KATNB1Q9BVA0 655 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 LHX6Q9UPM6 363 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 V9GY05 133 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 ARPC5O15511 151 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 EIF1BO60739 113 aaKnown RBP12.19□□□□□ -0.46
PTPRF-215ENST00000496447 FURINP09958 794 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 ITGAMP11215 1152 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 SSTR4P31391 388 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 TM4SF18Q96CE8 201 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 EGLN3Q9H6Z9 239 aa12.19□□□□□ -0.46
PTPRF-215ENST00000496447 A0A1B0GV50 99 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 METTL15A6NJ78 407 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 ZNF587BE7ETH6 402 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 IFNA10P01566 189 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 IFNA4P05014 189 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 STEAP3Q658P3 488 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 RSPO2Q6UXX9 243 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-215ENST00000496447 SSX9Q7RTT3 188 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 SLC16A9Q7RTY1 509 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 CCDC71Q8IV32 467 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-215ENST00000496447 ANGPTL6Q8NI99 470 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 SLC7A13Q8TCU3 470 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 SLC38A5Q8WUX1 472 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 C1orf198Q9H425 327 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 PCDHGA1Q9Y5H4 931 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 H7C1C5 153 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 SSX4O60224 188 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 SPDEFO95238 335 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 ALDOBP05062 364 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 OPRD1P41143 372 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 LCN6P62502 163 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 TSPAN31Q12999 210 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 PXDC1Q5TGL8 231 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 ZNF585AQ6P3V2 769 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 CNIH2Q6PI25 160 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 NME7Q9Y5B8 376 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 PRAMEF25A6NGN4 478 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 ZNF593O00488 134 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-215ENST00000496447 GABRB3P28472 473 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 CX3CR1P49238 355 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 HYAL4Q2M3T9 481 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 AFMIDQ63HM1 303 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 RTL6Q6ICC9 239 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 ABHD17CQ6PCB6 329 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 NDUFAF7Q7L592 441 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 SLC35F3Q8IY50 421 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 SULT4A1Q9BR01 284 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 METTL9Q9H1A3 318 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 DECR2Q9NUI1 292 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 MEIS3P1A6NDR6 274 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 F5H5P2 479 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 K7ESM1 405 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 TP53P04637 393 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-215ENST00000496447 METRNLQ641Q3 311 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 ZNF425Q6IV72 752 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 BPHLQ86WA6 291 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-215ENST00000496447 SERPINA12Q8IW75 414 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 SORCS2Q96PQ0 1159 aa12.18□□□□□ -0.46
PTPRF-215ENST00000496447 AKAIN1P0CW23 69 aa12.17□□□□□ -0.46
PTPRF-215ENST00000496447 CD1CP29017 333 aa12.17□□□□□ -0.46
PTPRF-215ENST00000496447 AQP2P41181 271 aa12.17□□□□□ -0.46
PTPRF-215ENST00000496447 BIDP55957 195 aa12.17□□□□□ -0.46
PTPRF-215ENST00000496447 FRMPD2BQ6IN97 320 aa12.17□□□□□ -0.46
PTPRF-215ENST00000496447 SLC48A1Q6P1K1 146 aa12.17□□□□□ -0.46
PTPRF-215ENST00000496447 NRARPQ7Z6K4 114 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms