RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 IGFN1Q86VF2 1251 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 C9orf40Q8IXQ3 194 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 DND1Q8IYX4 353 aaKnown RBP6.32□□□□□ -1.4
USP39-219ENST00000496047 PRR22Q8IZ63 422 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 ZNF248Q8NDW4 579 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 SDR9C7Q8NEX9 313 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 OR4F15Q8NGB8 312 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 OR52E2Q8NGJ4 325 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 OR2T27Q8NH04 317 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 OR4C3Q8NH37 302 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 OR5W2Q8NH69 310 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 B4GALNT2Q8NHY0 566 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 SPRYD4Q8WW59 207 aaPredicted RBP6.32□□□□□ -1.4
USP39-219ENST00000496047 GATAD2BQ8WXI9 593 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 SMPDL3BQ92485 455 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 THRSPQ92748 146 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 FGF11Q92914 225 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 ABHD17AQ96GS6 310 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 TNFRSF13CQ96RJ3 184 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 MNTQ99583 582 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 CENPOQ9BU64 300 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 MED18Q9BUE0 208 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 NXF2Q9GZY0 626 aaKnown RBP6.32□□□□□ -1.4
USP39-219ENST00000496047 WDR54Q9H977 334 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 TXNL4BQ9NX01 149 aaKnown RBP6.32□□□□□ -1.4
USP39-219ENST00000496047 GALNT8Q9NY28 637 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 GRHPRQ9UBQ7 328 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 CTSFQ9UBX1 484 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 IL20RAQ9UHF4 553 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 CLEC2DQ9UHP7 191 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 CARD8Q9Y2G2 431 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 HIF3AQ9Y2N7 669 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 CMAHPQ9Y471 501 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 IER3IP1Q9Y5U9 82 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 NPFFR2Q9Y5X5 522 aa6.32□□□□□ -1.4
USP39-219ENST00000496047 FAM186AA6NE01 2351 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 CACNA1HO95180 2353 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 TRBV11-1A0A0K0K1C0 115 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 IQCMA0A1B0GVH7 501 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 A0A1W2PQM1 296 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 ANKUB1A6NFN9 424 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 FAM183AA6NL82 134 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 HSPB2A8KAH6 182 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 A8MVM7 634 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 TP53I11O14683 189 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 PLD2O14939 933 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 FLRT2O43155 660 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 PTP4A3O75365 173 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 GPX5O75715 221 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 CDRT1O95170 752 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 APOL3O95236 402 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 LDOC1O95751 146 aaPredicted RBP6.31□□□□□ -1.4
USP39-219ENST00000496047 ONECUT2O95948 504 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 CD14P08571 375 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 TACSTD2P09758 323 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 SBK2P0C263 348 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 ZNF883P0CG24 379 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 LIMS3P0CW19 117 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 LIMS4P0CW20 117 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 GAAP10253 952 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 BMP4P12644 408 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 TDGF1P13385 188 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 EDN3P14138 238 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 ZNF16P17020 682 aaPredicted RBP6.31□□□□□ -1.4
USP39-219ENST00000496047 CELP19835 753 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 TACR3P29371 465 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 SDHAP31040 664 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 ZNF41P51814 821 aaPredicted RBP6.31□□□□□ -1.4
USP39-219ENST00000496047 MAP2K6P52564 334 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 CTXN1P60606 82 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 ZNF117Q03924 483 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 SRSF5Q13243 272 aaKnown RBP6.31□□□□□ -1.4
USP39-219ENST00000496047 GGTLC2Q14390 218 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 CD226Q15762 336 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 HSPB2Q16082 182 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 EXT1Q16394 746 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 ZNF74Q16587 644 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 NDUFAF6Q330K2 333 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 ZNF791Q3KP31 576 aaPredicted RBP6.31□□□□□ -1.4
USP39-219ENST00000496047 ZNF528Q3MIS6 628 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 FAM69AQ5T7M9 428 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 OR2G6Q5TZ20 316 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 C22orf42Q6IC83 251 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 DNM1P34Q6PK57 102 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 LANCL3Q6ZV70 420 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 COX15Q7KZN9 410 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 ASCL5Q7RTU5 278 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 GRINAQ7Z429 371 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 HDDC2Q7Z4H3 204 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 CPEB2Q7Z5Q1 589 aaKnown RBP6.31□□□□□ -1.4
USP39-219ENST00000496047 MARCH9Q86YJ5 346 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 KLBQ86Z14 1044 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 EGFL6Q8IUX8 553 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 SLC35F2Q8IXU6 374 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 SYS1Q8N2H4 156 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 MS4A15Q8N5U1 240 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 SIRT6Q8N6T7 355 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 DTWD2Q8NBA8 298 aa6.31□□□□□ -1.4
USP39-219ENST00000496047 LSM14AQ8ND56 463 aaKnown RBP6.31□□□□□ -1.4
USP39-219ENST00000496047 BBS1Q8NFJ9 593 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms