RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 ALKBH3Q96Q83 286 aaPredicted RBP19.25■□□□□ 0.67
HDDC3-203ENST00000494993 KCNS3Q9BQ31 491 aa19.25■□□□□ 0.67
HDDC3-203ENST00000494993 SVEP1Q4LDE5 3571 aa19.24■□□□□ 0.67
HDDC3-203ENST00000494993 A0A096LPI6 279 aa19.24■□□□□ 0.67
HDDC3-203ENST00000494993 VWC2LB2RUY7 222 aa19.24■□□□□ 0.67
HDDC3-203ENST00000494993 NPIPB7O75200 414 aa19.24■□□□□ 0.67
HDDC3-203ENST00000494993 TFPTP0C1Z6 253 aa19.24■□□□□ 0.67
HDDC3-203ENST00000494993 ZCCHC18P0CG32 403 aa19.24■□□□□ 0.67
HDDC3-203ENST00000494993 PRG2P13727 222 aa19.24■□□□□ 0.67
HDDC3-203ENST00000494993 PAX7P23759 505 aa19.24■□□□□ 0.67
HDDC3-203ENST00000494993 SNRPD2P62316 118 aaKnown RBP19.24■□□□□ 0.67
HDDC3-203ENST00000494993 LARS2Q15031 903 aaKnown RBP19.24■□□□□ 0.67
HDDC3-203ENST00000494993 ZSWIM7Q19AV6 140 aa19.24■□□□□ 0.67
HDDC3-203ENST00000494993 PDCD4Q53EL6 469 aaKnown RBP19.24■□□□□ 0.67
HDDC3-203ENST00000494993 PRAMEF8Q5VWM4 474 aa19.24■□□□□ 0.67
HDDC3-203ENST00000494993 PRAMEF7Q5VXH5 474 aa19.24■□□□□ 0.67
HDDC3-203ENST00000494993 CLIP4Q8N3C7 705 aa19.24■□□□□ 0.67
HDDC3-203ENST00000494993 ANKRD42Q8N9B4 389 aa19.24■□□□□ 0.67
HDDC3-203ENST00000494993 SLC38A5Q8WUX1 472 aa19.24■□□□□ 0.67
HDDC3-203ENST00000494993 C3orf49Q96BT1 292 aa19.24■□□□□ 0.67
HDDC3-203ENST00000494993 ZBTB9Q96C00 473 aa19.24■□□□□ 0.67
HDDC3-203ENST00000494993 KATNB1Q9BVA0 655 aa19.24■□□□□ 0.67
HDDC3-203ENST00000494993 TPT1P8Q9HAU6 139 aa19.24■□□□□ 0.67
HDDC3-203ENST00000494993 OR6C65A6NJZ3 312 aa19.23■□□□□ 0.67
HDDC3-203ENST00000494993 TMEM229AB2RXF0 380 aa19.23■□□□□ 0.67
HDDC3-203ENST00000494993 NDUFS8O00217 210 aa19.23■□□□□ 0.67
HDDC3-203ENST00000494993 LMX1BO60663 402 aa19.23■□□□□ 0.67
HDDC3-203ENST00000494993 SLC22A3O75751 556 aa19.23■□□□□ 0.67
HDDC3-203ENST00000494993 ANP32DO95626 131 aa19.23■□□□□ 0.67
HDDC3-203ENST00000494993 IDO1P14902 403 aa19.23■□□□□ 0.67
HDDC3-203ENST00000494993 NCF2P19878 526 aaPredicted RBP19.23■□□□□ 0.67
HDDC3-203ENST00000494993 GZMKP49863 264 aa19.23■□□□□ 0.67
HDDC3-203ENST00000494993 UBE2NP61088 152 aaKnown RBP19.23■□□□□ 0.67
HDDC3-203ENST00000494993 RPS26P11Q5JNZ5 115 aaPredicted RBP19.23■□□□□ 0.67
HDDC3-203ENST00000494993 NIPAL3Q6P499 406 aa19.23■□□□□ 0.67
HDDC3-203ENST00000494993 LINGO2Q7L985 606 aa19.23■□□□□ 0.67
HDDC3-203ENST00000494993 EPHX4Q8IUS5 362 aa19.23■□□□□ 0.67
HDDC3-203ENST00000494993 STK35Q8TDR2 534 aa19.23■□□□□ 0.67
HDDC3-203ENST00000494993 BCL2L2Q92843 193 aaPredicted RBP19.23■□□□□ 0.67
HDDC3-203ENST00000494993 TMEM19Q96HH6 336 aa19.23■□□□□ 0.67
HDDC3-203ENST00000494993 PIMREGQ9BSJ6 248 aa19.23■□□□□ 0.67
HDDC3-203ENST00000494993 SPATA9Q9BWV2 254 aa19.23■□□□□ 0.67
HDDC3-203ENST00000494993 PARD6BQ9BYG5 372 aa19.23■□□□□ 0.67
HDDC3-203ENST00000494993 SHARPINQ9H0F6 387 aa19.23■□□□□ 0.67
HDDC3-203ENST00000494993 CA10Q9NS85 328 aa19.23■□□□□ 0.67
HDDC3-203ENST00000494993 THAP1Q9NVV9 213 aa19.23■□□□□ 0.67
HDDC3-203ENST00000494993 RASD1Q9Y272 281 aa19.23■□□□□ 0.67
HDDC3-203ENST00000494993 CHST2Q9Y4C5 530 aa19.23■□□□□ 0.67
HDDC3-203ENST00000494993 ARPC4-TTLL3A0A0A6YYG9 625 aa19.22■□□□□ 0.67
HDDC3-203ENST00000494993 SNNO75324 88 aaPredicted RBP19.22■□□□□ 0.67
HDDC3-203ENST00000494993 UPK3AO75631 287 aa19.22■□□□□ 0.67
HDDC3-203ENST00000494993 CRYAAP02489 173 aa19.22■□□□□ 0.67
HDDC3-203ENST00000494993 KITP10721 976 aa19.22■□□□□ 0.67
HDDC3-203ENST00000494993 WDR4P57081 412 aaKnown RBP19.22■□□□□ 0.67
HDDC3-203ENST00000494993 GGTLC2Q14390 218 aa19.22■□□□□ 0.67
HDDC3-203ENST00000494993 GTDC1Q4AE62 458 aa19.22■□□□□ 0.67
HDDC3-203ENST00000494993 NXNQ6DKJ4 435 aa19.22■□□□□ 0.67
HDDC3-203ENST00000494993 SERPINA11Q86U17 422 aa19.22■□□□□ 0.67
HDDC3-203ENST00000494993 MAGEE2Q8TD90 523 aaPredicted RBP19.22■□□□□ 0.67
HDDC3-203ENST00000494993 MAELQ96JY0 434 aaKnown RBP19.22■□□□□ 0.67
HDDC3-203ENST00000494993 ZNF317Q96PQ6 595 aaPredicted RBP19.22■□□□□ 0.67
HDDC3-203ENST00000494993 LINC00470Q9BZP3 86 aa19.22■□□□□ 0.67
HDDC3-203ENST00000494993 ARMC7Q9H6L4 198 aa19.22■□□□□ 0.67
HDDC3-203ENST00000494993 CACYBPQ9HB71 228 aaKnown RBP19.22■□□□□ 0.67
HDDC3-203ENST00000494993 CRNNQ9UBG3 495 aaPredicted RBP19.22■□□□□ 0.67
HDDC3-203ENST00000494993 ZNF232Q9UNY5 417 aa19.22■□□□□ 0.67
HDDC3-203ENST00000494993 A0A0G2JPF8 293 aa19.21■□□□□ 0.67
HDDC3-203ENST00000494993 HNRNPCL2B2RXH8 293 aa19.21■□□□□ 0.67
HDDC3-203ENST00000494993 HNRNPCL3B7ZW38 293 aa19.21■□□□□ 0.67
HDDC3-203ENST00000494993 NR5A2O00482 541 aa19.21■□□□□ 0.67
HDDC3-203ENST00000494993 HNRNPCL1O60812 293 aaKnown RBP19.21■□□□□ 0.67
HDDC3-203ENST00000494993 PDE5AO76074 875 aa19.21■□□□□ 0.67
HDDC3-203ENST00000494993 AHSA1O95433 338 aa19.21■□□□□ 0.67
HDDC3-203ENST00000494993 HNRNPCL4P0DMR1 293 aa19.21■□□□□ 0.67
HDDC3-203ENST00000494993 SERPINF1P36955 418 aa19.21■□□□□ 0.67
HDDC3-203ENST00000494993 NR4A2P43354 598 aa19.21■□□□□ 0.67
HDDC3-203ENST00000494993 NAAAQ02083 359 aa19.21■□□□□ 0.67
HDDC3-203ENST00000494993 C3orf36Q3SXR2 165 aa19.21■□□□□ 0.67
HDDC3-203ENST00000494993 MSANTD1Q6ZTZ1 278 aa19.21■□□□□ 0.67
HDDC3-203ENST00000494993 SLC46A3Q7Z3Q1 461 aa19.21■□□□□ 0.67
HDDC3-203ENST00000494993 ARIH2OSQ8N7S6 290 aa19.21■□□□□ 0.67
HDDC3-203ENST00000494993 MFSD8Q8NHS3 518 aa19.21■□□□□ 0.67
HDDC3-203ENST00000494993 ITCHQ96J02 903 aa19.21■□□□□ 0.67
HDDC3-203ENST00000494993 VRK1Q99986 396 aaPredicted RBP19.21■□□□□ 0.67
HDDC3-203ENST00000494993 NELFAQ9H3P2 528 aa19.21■□□□□ 0.67
HDDC3-203ENST00000494993 RMND5AQ9H871 391 aa19.21■□□□□ 0.67
HDDC3-203ENST00000494993 MYOZ1Q9NP98 299 aaPredicted RBP19.21■□□□□ 0.67
HDDC3-203ENST00000494993 THUMPD1Q9NXG2 353 aaKnown RBP19.21■□□□□ 0.67
HDDC3-203ENST00000494993 ZIM2Q9NZV7 527 aa19.21■□□□□ 0.67
HDDC3-203ENST00000494993 IFT52Q9Y366 437 aa19.21■□□□□ 0.67
HDDC3-203ENST00000494993 TMEM247A6NEH6 219 aa19.2■□□□□ 0.66
HDDC3-203ENST00000494993 B9A039 149 aa19.2■□□□□ 0.66
HDDC3-203ENST00000494993 FTCDNL1E5RQL4 147 aa19.2■□□□□ 0.66
HDDC3-203ENST00000494993 SLCO1B7G3V0H7 640 aa19.2■□□□□ 0.66
HDDC3-203ENST00000494993 CECR9P0C854 216 aa19.2■□□□□ 0.66
HDDC3-203ENST00000494993 PNMTP11086 282 aa19.2■□□□□ 0.66
HDDC3-203ENST00000494993 IGFBP5P24593 272 aa19.2■□□□□ 0.66
HDDC3-203ENST00000494993 TUBA1BP68363 451 aa19.2■□□□□ 0.66
HDDC3-203ENST00000494993 TUBA4AP68366 448 aa19.2■□□□□ 0.66
HDDC3-203ENST00000494993 ADIPOQQ15848 244 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms