RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ATP5OP48047 213 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 GCLMP48507 274 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 CASP4P49662 377 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 ETV1P50549 477 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 DNAJB13P59910 316 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 RAB14P61106 215 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 PRKCDQ05655 676 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 FADDQ13158 208 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 KCNJ11Q14654 390 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 CDK10Q15131 360 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 KYAT1Q16773 422 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 DUSP7Q16829 419 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 ZNF506Q5JVG8 444 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 N4BP2L1Q5TBK1 243 aaPredicted RBP4.58□□□□□ -1.68
USP40-213ENST00000483216 STEAP4Q687X5 459 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 LEMD1Q68G75 181 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 PNCKQ6P2M8 343 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 NUFIP2Q7Z417 695 aaKnown RBP4.58□□□□□ -1.68
USP40-213ENST00000483216 SH2D6Q7Z4S9 175 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 SNX32Q86XE0 403 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 FAM9CQ8IZT9 166 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 GPD1LQ8N335 351 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 RHOXF1Q8NHV9 184 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 ACTL9Q8TC94 416 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 GANCQ8TET4 914 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 CDHR1Q96JP9 859 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 SERAC1Q96JX3 654 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 ZNF560Q96MR9 790 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 GLT1D1Q96MS3 346 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 SLC39A3Q9BRY0 314 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 TMEM121Q9BTD3 319 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 TMEM245Q9H330 911 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 ZDHHC6Q9H6R6 413 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 LRRC40Q9H9A6 602 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 DBNDD1Q9H9R9 158 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 NMRAL1Q9HBL8 299 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 DDX28Q9NUL7 540 aaKnown RBP4.58□□□□□ -1.68
USP40-213ENST00000483216 BFARQ9NZS9 450 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 NYAP2Q9P242 653 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 MTRRQ9UBK8 725 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 ATP6V1HQ9UI12 483 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 ENPP5Q9UJA9 477 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 STAP1Q9ULZ2 295 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 MGAT4AQ9UM21 535 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 RABL2BQ9UNT1 228 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 ERVW-1Q9UQF0 538 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 PDE10AQ9Y233 779 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 LIPT1Q9Y234 373 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 AP1M2Q9Y6Q5 423 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 UTRNP46939 3433 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 SLX4Q8IY92 1834 aa4.58□□□□□ -1.68
USP40-213ENST00000483216 PTPRJQ12913 1337 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 A4D1N5 150 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 GOLGA8IPA6NC78 632 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 TUBAL3A6NHL2 446 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 CLDN24A6NM45 220 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 GOLGA8JA6NMD2 632 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 ZNF724A8MTY0 619 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 ZNF99A8MXY4 864 aaPredicted RBP4.57□□□□□ -1.68
USP40-213ENST00000483216 POLR1CO15160 346 aaPredicted RBP4.57□□□□□ -1.68
USP40-213ENST00000483216 UBDO15205 165 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 ZNF354AO60765 605 aaPredicted RBP4.57□□□□□ -1.68
USP40-213ENST00000483216 SLITRK3O94933 977 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 VAPBO95292 243 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 TGM6O95932 706 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 CAPN1P07384 714 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 RBP1P09455 135 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 CTRB1P17538 263 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 KDELR1P24390 212 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 CDH5P33151 784 aaPredicted RBP4.57□□□□□ -1.68
USP40-213ENST00000483216 OR1D2P34982 312 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 HPCAL1P37235 193 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 DDOSTP39656 456 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 QARSP47897 775 aaKnown RBP4.57□□□□□ -1.68
USP40-213ENST00000483216 NPY2RP49146 381 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 TKTL1P51854 596 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 MAP3K7CLP57077 242 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 C1QTNF8P60827 252 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 CUL2Q13617 745 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 ATP6AP1Q15904 470 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 CCL14Q16627 93 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 NRF1Q16656 503 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 UBE2SQ16763 222 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 TMEM44Q2T9K0 475 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 TOR1AIP1Q5JTV8 583 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 C6orf183Q5T699 404 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 CTRB2Q6GPI1 263 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 SULT1C3Q6IMI6 304 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 LCN8Q6JVE9 175 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 MFSD7Q6UXD7 560 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 TMEM179Q6ZVK1 233 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 HIPK1Q86Z02 1210 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 ELMOD2Q8IZ81 293 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 GMCL1P1Q8NEA9 526 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 TYMSOSQ8TAI1 123 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 ZPLD1Q8TCW7 415 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 TFB1MQ8WVM0 346 aaKnown RBP4.57□□□□□ -1.68
USP40-213ENST00000483216 CYGBQ8WWM9 190 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 AP2M1Q96CW1 435 aa4.57□□□□□ -1.68
USP40-213ENST00000483216 VAT1Q99536 393 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms