RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 C11orf71Q6IPW1 123 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 DHRS4L2Q6PKH6 230 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 AAED1Q7RTV5 226 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 GPAT4Q86UL3 456 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 PTOV1Q86YD1 416 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 KDM8Q8N371 416 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 LSMEM1Q8N8F7 131 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 C1orf162Q8NEQ5 155 aaPredicted RBP12.35□□□□□ -0.43
UPF3A-204ENST00000475218 STK35Q8TDR2 534 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 BOD1Q96IK1 185 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 RAD21L1Q9H4I0 556 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 TMEM38AQ9H6F2 299 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 VIPAS39Q9H9C1 493 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 MED4Q9NPJ6 270 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 PARPBPQ9NWS1 579 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 B3GAT1Q9P2W7 334 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 DNHD1Q96M86 4753 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 A0A1B0GWA3 101 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 HMGB1P1B2RPK0 211 aaPredicted RBP12.35□□□□□ -0.43
UPF3A-204ENST00000475218 PNMTP11086 282 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 MPGP29372 298 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 RPS5P46782 204 aaKnown RBP12.35□□□□□ -0.43
UPF3A-204ENST00000475218 RUNDC3AQ59EK9 446 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 OR7E24Q6IFN5 339 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 REEP3Q6NUK4 255 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 MFSD8Q8NHS3 518 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 MAGEB18Q96M61 343 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 GRIP2Q9C0E4 1043 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 SLCO5A1Q9H2Y9 848 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 PIF1Q9H611 641 aa12.35□□□□□ -0.43
UPF3A-204ENST00000475218 TMEM247A6NEH6 219 aa12.34□□□□□ -0.43
UPF3A-204ENST00000475218 M0R1B8 84 aa12.34□□□□□ -0.43
UPF3A-204ENST00000475218 EDF1O60869 148 aaKnown RBP12.34□□□□□ -0.43
UPF3A-204ENST00000475218 ACVR1BP36896 505 aa12.34□□□□□ -0.43
UPF3A-204ENST00000475218 PCBP3P57721 371 aaKnown RBP12.34□□□□□ -0.43
UPF3A-204ENST00000475218 SCARB2Q14108 478 aa12.34□□□□□ -0.43
UPF3A-204ENST00000475218 HIKESHIQ53FT3 197 aa12.34□□□□□ -0.43
UPF3A-204ENST00000475218 TMEM108Q6UXF1 575 aa12.34□□□□□ -0.43
UPF3A-204ENST00000475218 SSX8Q7RTT4 187 aa12.34□□□□□ -0.43
UPF3A-204ENST00000475218 C17orf78Q8N4C9 275 aa12.34□□□□□ -0.43
UPF3A-204ENST00000475218 MAPK1IP1LQ8NDC0 245 aa12.34□□□□□ -0.43
UPF3A-204ENST00000475218 DYDC1Q8WWB3 177 aa12.34□□□□□ -0.43
UPF3A-204ENST00000475218 TAAR8Q969N4 342 aa12.34□□□□□ -0.43
UPF3A-204ENST00000475218 TAPBPLQ9BX59 468 aa12.34□□□□□ -0.43
UPF3A-204ENST00000475218 NELFAQ9H3P2 528 aa12.34□□□□□ -0.43
UPF3A-204ENST00000475218 UPB1Q9UBR1 384 aa12.34□□□□□ -0.43
UPF3A-204ENST00000475218 ALPK2Q86TB3 2170 aa12.34□□□□□ -0.43
UPF3A-204ENST00000475218 HEATR1Q9H583 2144 aaKnown RBP12.33□□□□□ -0.43
UPF3A-204ENST00000475218 C5orf58C9J3I9 102 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 UPK3AO75631 287 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 ZNF432O94892 652 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 PTAFRP25105 342 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 AQP1P29972 269 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 IRX1P78414 480 aaPredicted RBP12.33□□□□□ -0.44
UPF3A-204ENST00000475218 CLEC12BQ2HXU8 276 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 HSP90B2PQ58FF3 399 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 TMEM225Q6GV28 225 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 WDFY1Q8IWB7 410 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 SLC25A36Q96CQ1 311 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 ALKBH3Q96Q83 286 aaPredicted RBP12.33□□□□□ -0.44
UPF3A-204ENST00000475218 ARMC7Q9H6L4 198 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 C12orf10Q9HB07 376 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.33□□□□□ -0.44
UPF3A-204ENST00000475218 B3GALT5Q9Y2C3 310 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 ABCA2Q9BZC7 2435 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 ERICH4A6NGS2 130 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 MFN2O95140 757 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 AHSA1O95433 338 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 LGI1O95970 557 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 PPIBP23284 216 aaKnown RBP12.33□□□□□ -0.44
UPF3A-204ENST00000475218 TTKP33981 857 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 NHLRC1Q6VVB1 395 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 DPP10Q8N608 796 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 POMGNT2Q8NAT1 580 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 GPR32P1Q8NGA4 272 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 GTPBP3Q969Y2 492 aaKnown RBP12.33□□□□□ -0.44
UPF3A-204ENST00000475218 RADILQ96JH8 1075 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 NPHS2Q9NP85 383 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 KLHL14Q9P2G3 628 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 ADAM21Q9UKJ8 722 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 RASD1Q9Y272 281 aa12.33□□□□□ -0.44
UPF3A-204ENST00000475218 FBN1P35555 2871 aaKnown RBP12.32□□□□□ -0.44
UPF3A-204ENST00000475218 JMJD1CQ15652 2540 aa12.32□□□□□ -0.44
UPF3A-204ENST00000475218 HIVEP2P31629 2446 aa12.32□□□□□ -0.44
UPF3A-204ENST00000475218 ELOA3DA6NLF2 546 aaPredicted RBP12.32□□□□□ -0.44
UPF3A-204ENST00000475218 FAM171A2A8MVW0 826 aa12.32□□□□□ -0.44
UPF3A-204ENST00000475218 RNF223E7ERA6 249 aa12.32□□□□□ -0.44
UPF3A-204ENST00000475218 VAMP5O95183 116 aa12.32□□□□□ -0.44
UPF3A-204ENST00000475218 CDH2P19022 906 aaPredicted RBP12.32□□□□□ -0.44
UPF3A-204ENST00000475218 CRYBA2P53672 197 aa12.32□□□□□ -0.44
UPF3A-204ENST00000475218 MTPNP58546 118 aa12.32□□□□□ -0.44
UPF3A-204ENST00000475218 ZSCAN26Q16670 478 aa12.32□□□□□ -0.44
UPF3A-204ENST00000475218 ELOA3BQ3SY89 546 aa12.32□□□□□ -0.44
UPF3A-204ENST00000475218 SLC22A25Q6T423 547 aa12.32□□□□□ -0.44
UPF3A-204ENST00000475218 TSPYL5Q86VY4 417 aaPredicted RBP12.32□□□□□ -0.44
UPF3A-204ENST00000475218 ELOA3Q8NG57 546 aa12.32□□□□□ -0.44
UPF3A-204ENST00000475218 OR1K1Q8NGR3 316 aa12.32□□□□□ -0.44
UPF3A-204ENST00000475218 BCL2L2Q92843 193 aaPredicted RBP12.32□□□□□ -0.44
UPF3A-204ENST00000475218 SLC38A4Q969I6 547 aa12.32□□□□□ -0.44
UPF3A-204ENST00000475218 ZNF837Q96EG3 531 aaPredicted RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms