RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 TMEM225Q6GV28 225 aa16.26■□□□□ 0.19
COL7A1-209ENST00000474432 DHRS4L2Q6PKH6 230 aa16.26■□□□□ 0.19
COL7A1-209ENST00000474432 GPAT4Q86UL3 456 aa16.26■□□□□ 0.19
COL7A1-209ENST00000474432 C17orf78Q8N4C9 275 aa16.26■□□□□ 0.19
COL7A1-209ENST00000474432 LSMEM1Q8N8F7 131 aa16.26■□□□□ 0.19
COL7A1-209ENST00000474432 MFSD8Q8NHS3 518 aa16.26■□□□□ 0.19
COL7A1-209ENST00000474432 CKAP2Q8WWK9 683 aa16.26■□□□□ 0.19
COL7A1-209ENST00000474432 STON2Q8WXE9 905 aa16.26■□□□□ 0.19
COL7A1-209ENST00000474432 TRMT61AQ96FX7 289 aaKnown RBP16.26■□□□□ 0.19
COL7A1-209ENST00000474432 RADILQ96JH8 1075 aa16.26■□□□□ 0.19
COL7A1-209ENST00000474432 CPPED1Q9BRF8 314 aaPredicted RBP16.26■□□□□ 0.19
COL7A1-209ENST00000474432 TAPBPLQ9BX59 468 aa16.26■□□□□ 0.19
COL7A1-209ENST00000474432 ARMC7Q9H6L4 198 aa16.26■□□□□ 0.19
COL7A1-209ENST00000474432 B3GALT5Q9Y2C3 310 aa16.26■□□□□ 0.19
COL7A1-209ENST00000474432 ANK3Q12955 4377 aaKnown RBP16.26■□□□□ 0.19
COL7A1-209ENST00000474432 SONP18583 2426 aaKnown RBP16.25■□□□□ 0.19
COL7A1-209ENST00000474432 A0A1B0GWA3 101 aa16.25■□□□□ 0.19
COL7A1-209ENST00000474432 M0R1B8 84 aa16.25■□□□□ 0.19
COL7A1-209ENST00000474432 TPST2O60704 377 aa16.25■□□□□ 0.19
COL7A1-209ENST00000474432 VAMP5O95183 116 aa16.25■□□□□ 0.19
COL7A1-209ENST00000474432 PNMTP11086 282 aa16.25■□□□□ 0.19
COL7A1-209ENST00000474432 TTKP33981 857 aa16.25■□□□□ 0.19
COL7A1-209ENST00000474432 SQLEQ14534 574 aa16.25■□□□□ 0.19
COL7A1-209ENST00000474432 REEP3Q6NUK4 255 aa16.25■□□□□ 0.19
COL7A1-209ENST00000474432 PIAS4Q8N2W9 510 aaPredicted RBP16.25■□□□□ 0.19
COL7A1-209ENST00000474432 KDM8Q8N371 416 aa16.25■□□□□ 0.19
COL7A1-209ENST00000474432 POMGNT2Q8NAT1 580 aa16.25■□□□□ 0.19
COL7A1-209ENST00000474432 GTPBP3Q969Y2 492 aaKnown RBP16.25■□□□□ 0.19
COL7A1-209ENST00000474432 TMEM38AQ9H6F2 299 aa16.25■□□□□ 0.19
COL7A1-209ENST00000474432 C12orf10Q9HB07 376 aa16.25■□□□□ 0.19
COL7A1-209ENST00000474432 INTS9Q9NV88 658 aaKnown RBP16.25■□□□□ 0.19
COL7A1-209ENST00000474432 B3GAT1Q9P2W7 334 aa16.25■□□□□ 0.19
COL7A1-209ENST00000474432 MGAT4BQ9UQ53 548 aa16.25■□□□□ 0.19
COL7A1-209ENST00000474432 ABCA1O95477 2261 aa16.25■□□□□ 0.19
COL7A1-209ENST00000474432 C5orf58C9J3I9 102 aa16.24■□□□□ 0.19
COL7A1-209ENST00000474432 UPK3AO75631 287 aa16.24■□□□□ 0.19
COL7A1-209ENST00000474432 AHSA1O95433 338 aa16.24■□□□□ 0.19
COL7A1-209ENST00000474432 H2AFXP16104 143 aaPredicted RBP16.24■□□□□ 0.19
COL7A1-209ENST00000474432 PPIBP23284 216 aaKnown RBP16.24■□□□□ 0.19
COL7A1-209ENST00000474432 RPS5P46782 204 aaKnown RBP16.24■□□□□ 0.19
COL7A1-209ENST00000474432 IRX1P78414 480 aaPredicted RBP16.24■□□□□ 0.19
COL7A1-209ENST00000474432 ETFDHQ16134 617 aa16.24■□□□□ 0.19
COL7A1-209ENST00000474432 HIKESHIQ53FT3 197 aa16.24■□□□□ 0.19
COL7A1-209ENST00000474432 RUNDC3AQ59EK9 446 aa16.24■□□□□ 0.19
COL7A1-209ENST00000474432 SLC22A25Q6T423 547 aa16.24■□□□□ 0.19
COL7A1-209ENST00000474432 KLHL17Q6TDP4 642 aa16.24■□□□□ 0.19
COL7A1-209ENST00000474432 RETREG3Q86VR2 466 aa16.24■□□□□ 0.19
COL7A1-209ENST00000474432 PTOV1Q86YD1 416 aa16.24■□□□□ 0.19
COL7A1-209ENST00000474432 MAPK1IP1LQ8NDC0 245 aa16.24■□□□□ 0.19
COL7A1-209ENST00000474432 TAAR8Q969N4 342 aa16.24■□□□□ 0.19
COL7A1-209ENST00000474432 THOC1Q96FV9 657 aaKnown RBP16.24■□□□□ 0.19
COL7A1-209ENST00000474432 DHRS9Q9BPW9 319 aa16.24■□□□□ 0.19
COL7A1-209ENST00000474432 NELFAQ9H3P2 528 aa16.24■□□□□ 0.19
COL7A1-209ENST00000474432 RASD1Q9Y272 281 aa16.24■□□□□ 0.19
COL7A1-209ENST00000474432 AMDHD2Q9Y303 409 aa16.24■□□□□ 0.19
COL7A1-209ENST00000474432 ARFGEF3Q5TH69 2177 aa16.23■□□□□ 0.19
COL7A1-209ENST00000474432 HMGB1P1B2RPK0 211 aaPredicted RBP16.23■□□□□ 0.19
COL7A1-209ENST00000474432 RNF223E7ERA6 249 aa16.23■□□□□ 0.19
COL7A1-209ENST00000474432 ZNF432O94892 652 aa16.23■□□□□ 0.19
COL7A1-209ENST00000474432 SCARB2Q14108 478 aa16.23■□□□□ 0.19
COL7A1-209ENST00000474432 VEZF1Q14119 521 aa16.23■□□□□ 0.19
COL7A1-209ENST00000474432 DYDC1Q8WWB3 177 aa16.23■□□□□ 0.19
COL7A1-209ENST00000474432 SLC25A36Q96CQ1 311 aa16.23■□□□□ 0.19
COL7A1-209ENST00000474432 MAGEB18Q96M61 343 aa16.23■□□□□ 0.19
COL7A1-209ENST00000474432 VIPAS39Q9H9C1 493 aa16.23■□□□□ 0.19
COL7A1-209ENST00000474432 CACYBPQ9HB71 228 aaKnown RBP16.23■□□□□ 0.19
COL7A1-209ENST00000474432 ELOA3DA6NLF2 546 aaPredicted RBP16.22■□□□□ 0.19
COL7A1-209ENST00000474432 MFN2O95140 757 aa16.22■□□□□ 0.19
COL7A1-209ENST00000474432 LGI1O95970 557 aa16.22■□□□□ 0.19
COL7A1-209ENST00000474432 PCSK6P29122 969 aa16.22■□□□□ 0.19
COL7A1-209ENST00000474432 PCBP3P57721 371 aaKnown RBP16.22■□□□□ 0.19
COL7A1-209ENST00000474432 TGFBR3Q03167 851 aa16.22■□□□□ 0.19
COL7A1-209ENST00000474432 DMTNQ08495 405 aa16.22■□□□□ 0.19
COL7A1-209ENST00000474432 SELPLGQ14242 412 aa16.22■□□□□ 0.19
COL7A1-209ENST00000474432 ELOA3BQ3SY89 546 aa16.22■□□□□ 0.19
COL7A1-209ENST00000474432 C1QTNF12Q5T7M4 302 aa16.22■□□□□ 0.19
COL7A1-209ENST00000474432 AGAP6Q5VW22 663 aa16.22■□□□□ 0.19
COL7A1-209ENST00000474432 NIPAL3Q6P499 406 aa16.22■□□□□ 0.19
COL7A1-209ENST00000474432 NHLRC1Q6VVB1 395 aa16.22■□□□□ 0.19
COL7A1-209ENST00000474432 HDXQ7Z353 690 aa16.22■□□□□ 0.19
COL7A1-209ENST00000474432 PRIMA1Q86XR5 153 aa16.22■□□□□ 0.19
COL7A1-209ENST00000474432 DPP10Q8N608 796 aa16.22■□□□□ 0.19
COL7A1-209ENST00000474432 ELOA3Q8NG57 546 aa16.22■□□□□ 0.19
COL7A1-209ENST00000474432 OR1K1Q8NGR3 316 aa16.22■□□□□ 0.19
COL7A1-209ENST00000474432 BCL2L2Q92843 193 aaPredicted RBP16.22■□□□□ 0.19
COL7A1-209ENST00000474432 SLC38A4Q969I6 547 aa16.22■□□□□ 0.19
COL7A1-209ENST00000474432 REG4Q9BYZ8 158 aa16.22■□□□□ 0.19
COL7A1-209ENST00000474432 CBLN4Q9NTU7 201 aa16.22■□□□□ 0.19
COL7A1-209ENST00000474432 YLPM1P49750 1951 aaKnown RBP16.21■□□□□ 0.19
COL7A1-209ENST00000474432 INAFM1C9JVW0 142 aa16.21■□□□□ 0.19
COL7A1-209ENST00000474432 EDF1O60869 148 aaKnown RBP16.21■□□□□ 0.19
COL7A1-209ENST00000474432 SASH3O75995 380 aa16.21■□□□□ 0.19
COL7A1-209ENST00000474432 CDH2P19022 906 aaPredicted RBP16.21■□□□□ 0.19
COL7A1-209ENST00000474432 AQP1P29972 269 aa16.21■□□□□ 0.19
COL7A1-209ENST00000474432 PRPS1P60891 318 aa16.21■□□□□ 0.19
COL7A1-209ENST00000474432 TBRG1Q3YBR2 411 aa16.21■□□□□ 0.19
COL7A1-209ENST00000474432 MUC15Q8N387 334 aa16.21■□□□□ 0.19
COL7A1-209ENST00000474432 ANKRD27Q96NW4 1050 aa16.21■□□□□ 0.19
COL7A1-209ENST00000474432 ALKBH3Q96Q83 286 aaPredicted RBP16.21■□□□□ 0.19
COL7A1-209ENST00000474432 CACNG6Q9BXT2 260 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms