RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 SLCO1B3Q9NPD5 702 aa16.44■□□□□ 0.22
CCDC88B-206ENST00000473405 TCF7L2Q9NQB0 619 aa16.44■□□□□ 0.22
CCDC88B-206ENST00000473405 IFT52Q9Y366 437 aa16.44■□□□□ 0.22
CCDC88B-206ENST00000473405 CRLF1O75462 422 aa16.43■□□□□ 0.22
CCDC88B-206ENST00000473405 SELENOPP49908 381 aa16.43■□□□□ 0.22
CCDC88B-206ENST00000473405 FABP6P51161 128 aa16.43■□□□□ 0.22
CCDC88B-206ENST00000473405 EGR4Q05215 589 aa16.43■□□□□ 0.22
CCDC88B-206ENST00000473405 LRIF1Q5T3J3 769 aa16.43■□□□□ 0.22
CCDC88B-206ENST00000473405 C1QTNF12Q5T7M4 302 aa16.43■□□□□ 0.22
CCDC88B-206ENST00000473405 ZNF544Q6NX49 715 aa16.43■□□□□ 0.22
CCDC88B-206ENST00000473405 BLOC1S3Q6QNY0 202 aa16.43■□□□□ 0.22
CCDC88B-206ENST00000473405 CREB3L2Q70SY1 520 aa16.43■□□□□ 0.22
CCDC88B-206ENST00000473405 LINGO2Q7L985 606 aa16.43■□□□□ 0.22
CCDC88B-206ENST00000473405 EPHX4Q8IUS5 362 aa16.43■□□□□ 0.22
CCDC88B-206ENST00000473405 FBXL14Q8N1E6 418 aa16.43■□□□□ 0.22
CCDC88B-206ENST00000473405 GOLGA6L1Q8N7Z2 621 aa16.43■□□□□ 0.22
CCDC88B-206ENST00000473405 BBS10Q8TAM1 723 aa16.43■□□□□ 0.22
CCDC88B-206ENST00000473405 STK35Q8TDR2 534 aa16.43■□□□□ 0.22
CCDC88B-206ENST00000473405 HTRA1Q92743 480 aa16.43■□□□□ 0.22
CCDC88B-206ENST00000473405 SLC35B4Q969S0 331 aa16.43■□□□□ 0.22
CCDC88B-206ENST00000473405 ALKBH3Q96Q83 286 aaPredicted RBP16.43■□□□□ 0.22
CCDC88B-206ENST00000473405 RAD21L1Q9H4I0 556 aa16.43■□□□□ 0.22
CCDC88B-206ENST00000473405 ARMC7Q9H6L4 198 aa16.43■□□□□ 0.22
CCDC88B-206ENST00000473405 CACYBPQ9HB71 228 aaKnown RBP16.43■□□□□ 0.22
CCDC88B-206ENST00000473405 SLC52A3Q9NQ40 469 aa16.43■□□□□ 0.22
CCDC88B-206ENST00000473405 SLAMF8Q9P0V8 285 aa16.43■□□□□ 0.22
CCDC88B-206ENST00000473405 IGHV4-30-2A0A087WSY4 118 aa16.42■□□□□ 0.22
CCDC88B-206ENST00000473405 TRBV5-3A0A0A0MS03 114 aa16.42■□□□□ 0.22
CCDC88B-206ENST00000473405 ATP6V1G2-DDX39BF2Z307 99 aa16.42■□□□□ 0.22
CCDC88B-206ENST00000473405 H7C417 338 aa16.42■□□□□ 0.22
CCDC88B-206ENST00000473405 POLR3GO15318 223 aaPredicted RBP16.42■□□□□ 0.22
CCDC88B-206ENST00000473405 FZD7O75084 574 aa16.42■□□□□ 0.22
CCDC88B-206ENST00000473405 VAMP5O95183 116 aa16.42■□□□□ 0.22
CCDC88B-206ENST00000473405 TGDSO95455 350 aa16.42■□□□□ 0.22
CCDC88B-206ENST00000473405 CDH2P19022 906 aaPredicted RBP16.42■□□□□ 0.22
CCDC88B-206ENST00000473405 IDH3AP50213 366 aa16.42■□□□□ 0.22
CCDC88B-206ENST00000473405 NUDT6P53370 316 aa16.42■□□□□ 0.22
CCDC88B-206ENST00000473405 AGBL2Q5U5Z8 902 aa16.42■□□□□ 0.22
CCDC88B-206ENST00000473405 TMEM225Q6GV28 225 aa16.42■□□□□ 0.22
CCDC88B-206ENST00000473405 C6orf89Q6UWU4 347 aa16.42■□□□□ 0.22
CCDC88B-206ENST00000473405 DEPDC4Q8N2C3 294 aa16.42■□□□□ 0.22
CCDC88B-206ENST00000473405 OR10H5Q8NGA6 315 aa16.42■□□□□ 0.22
CCDC88B-206ENST00000473405 OR1K1Q8NGR3 316 aa16.42■□□□□ 0.22
CCDC88B-206ENST00000473405 MFSD8Q8NHS3 518 aa16.42■□□□□ 0.22
CCDC88B-206ENST00000473405 KTI12Q96EK9 354 aaPredicted RBP16.42■□□□□ 0.22
CCDC88B-206ENST00000473405 ADAD1Q96M93 576 aaKnown RBP16.42■□□□□ 0.22
CCDC88B-206ENST00000473405 MDFIQ99750 246 aa16.42■□□□□ 0.22
CCDC88B-206ENST00000473405 SEC14L4Q9UDX3 406 aa16.42■□□□□ 0.22
CCDC88B-206ENST00000473405 NR5A2O00482 541 aa16.41■□□□□ 0.22
CCDC88B-206ENST00000473405 CD5LO43866 347 aa16.41■□□□□ 0.22
CCDC88B-206ENST00000473405 AHSA1O95433 338 aa16.41■□□□□ 0.22
CCDC88B-206ENST00000473405 LGI1O95970 557 aa16.41■□□□□ 0.22
CCDC88B-206ENST00000473405 ARAFP10398 606 aa16.41■□□□□ 0.22
CCDC88B-206ENST00000473405 PNMTP11086 282 aa16.41■□□□□ 0.22
CCDC88B-206ENST00000473405 ETS2P15036 469 aa16.41■□□□□ 0.22
CCDC88B-206ENST00000473405 HTR2AP28223 471 aa16.41■□□□□ 0.22
CCDC88B-206ENST00000473405 PRKAR1BP31321 381 aa16.41■□□□□ 0.22
CCDC88B-206ENST00000473405 RPS5P46782 204 aaKnown RBP16.41■□□□□ 0.22
CCDC88B-206ENST00000473405 PRPS1P60891 318 aa16.41■□□□□ 0.22
CCDC88B-206ENST00000473405 STX1BP61266 288 aa16.41■□□□□ 0.22
CCDC88B-206ENST00000473405 ABHD12BQ7Z5M8 362 aaPredicted RBP16.41■□□□□ 0.22
CCDC88B-206ENST00000473405 NFKBIDQ8NI38 313 aa16.41■□□□□ 0.22
CCDC88B-206ENST00000473405 NELFAQ9H3P2 528 aa16.41■□□□□ 0.22
CCDC88B-206ENST00000473405 IKZF5Q9H5V7 419 aa16.41■□□□□ 0.22
CCDC88B-206ENST00000473405 FKRPQ9H9S5 495 aa16.41■□□□□ 0.22
CCDC88B-206ENST00000473405 VAPAQ9P0L0 249 aa16.41■□□□□ 0.22
CCDC88B-206ENST00000473405 B3GAT1Q9P2W7 334 aa16.41■□□□□ 0.22
CCDC88B-206ENST00000473405 RASD1Q9Y272 281 aa16.41■□□□□ 0.22
CCDC88B-206ENST00000473405 GMEB1Q9Y692 573 aa16.41■□□□□ 0.22
CCDC88B-206ENST00000473405 ATP23Q9Y6H3 246 aa16.41■□□□□ 0.22
CCDC88B-206ENST00000473405 IGHV1-18A0A0C4DH31 117 aa16.4■□□□□ 0.22
CCDC88B-206ENST00000473405 ZNF587BE7ETH6 402 aa16.4■□□□□ 0.22
CCDC88B-206ENST00000473405 UPK3AO75631 287 aa16.4■□□□□ 0.22
CCDC88B-206ENST00000473405 WNT11O96014 354 aa16.4■□□□□ 0.22
CCDC88B-206ENST00000473405 TBRG1Q3YBR2 411 aa16.4■□□□□ 0.22
CCDC88B-206ENST00000473405 PAGE3Q5JUK9 113 aa16.4■□□□□ 0.22
CCDC88B-206ENST00000473405 NIPAL3Q6P499 406 aa16.4■□□□□ 0.22
CCDC88B-206ENST00000473405 KLHL24Q6TFL4 600 aa16.4■□□□□ 0.22
CCDC88B-206ENST00000473405 KDM8Q8N371 416 aa16.4■□□□□ 0.22
CCDC88B-206ENST00000473405 ZNF525Q8N782 197 aa16.4■□□□□ 0.22
CCDC88B-206ENST00000473405 SPDL1Q96EA4 605 aa16.4■□□□□ 0.22
CCDC88B-206ENST00000473405 RHNO1Q9BSD3 238 aa16.4■□□□□ 0.22
CCDC88B-206ENST00000473405 OBP2BQ9NPH6 170 aa16.4■□□□□ 0.22
CCDC88B-206ENST00000473405 TMEM45AQ9NWC5 275 aa16.4■□□□□ 0.22
CCDC88B-206ENST00000473405 CCDC167Q9P0B6 97 aa16.4■□□□□ 0.22
CCDC88B-206ENST00000473405 MOKQ9UQ07 419 aa16.4■□□□□ 0.22
CCDC88B-206ENST00000473405 IGKV1D-42A0A075B6H8 117 aa16.39■□□□□ 0.21
CCDC88B-206ENST00000473405 A0A1B0GWA3 101 aa16.39■□□□□ 0.21
CCDC88B-206ENST00000473405 ELOA3DA6NLF2 546 aaPredicted RBP16.39■□□□□ 0.21
CCDC88B-206ENST00000473405 C5orf58C9J3I9 102 aa16.39■□□□□ 0.21
CCDC88B-206ENST00000473405 GPRIN2O60269 458 aa16.39■□□□□ 0.21
CCDC88B-206ENST00000473405 KRT33AO76009 404 aa16.39■□□□□ 0.21
CCDC88B-206ENST00000473405 ZNF432O94892 652 aa16.39■□□□□ 0.21
CCDC88B-206ENST00000473405 TP53P04637 393 aaPredicted RBP16.39■□□□□ 0.21
CCDC88B-206ENST00000473405 RAB35Q15286 201 aa16.39■□□□□ 0.21
CCDC88B-206ENST00000473405 ELOA3BQ3SY89 546 aa16.39■□□□□ 0.21
CCDC88B-206ENST00000473405 GCNT6Q5T4J0 391 aa16.39■□□□□ 0.21
CCDC88B-206ENST00000473405 CLEC2AQ6UVW9 174 aa16.39■□□□□ 0.21
CCDC88B-206ENST00000473405 LSMEM1Q8N8F7 131 aa16.39■□□□□ 0.21
CCDC88B-206ENST00000473405 ELOA3Q8NG57 546 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms