RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 BMP2P12643 396 aa11.82□□□□□ -0.52
CHD3-209ENST00000473376 CCNA2P20248 432 aa11.82□□□□□ -0.52
CHD3-209ENST00000473376 MRPL19P49406 292 aaKnown RBP11.82□□□□□ -0.52
CHD3-209ENST00000473376 SNRPD2P62316 118 aaKnown RBP11.82□□□□□ -0.52
CHD3-209ENST00000473376 LSM11P83369 360 aaKnown RBP eCLIP11.82□□□□□ -0.52
CHD3-209ENST00000473376 FADDQ13158 208 aa11.82□□□□□ -0.52
CHD3-209ENST00000473376 OR7A5Q15622 319 aa11.82□□□□□ -0.52
CHD3-209ENST00000473376 MST1LQ2TV78 715 aa11.82□□□□□ -0.52
CHD3-209ENST00000473376 C1orf140Q5VVS0 124 aa11.82□□□□□ -0.52
CHD3-209ENST00000473376 ANKRD16Q6P6B7 361 aa11.82□□□□□ -0.52
CHD3-209ENST00000473376 ZNF836Q6ZNA1 936 aa11.82□□□□□ -0.52
CHD3-209ENST00000473376 NET1Q7Z628 596 aaPredicted RBP11.82□□□□□ -0.52
CHD3-209ENST00000473376 ZNF525Q8N782 197 aa11.82□□□□□ -0.52
CHD3-209ENST00000473376 IL17RDQ8NFM7 739 aa11.82□□□□□ -0.52
CHD3-209ENST00000473376 OR1K1Q8NGR3 316 aa11.82□□□□□ -0.52
CHD3-209ENST00000473376 ITCHQ96J02 903 aa11.82□□□□□ -0.52
CHD3-209ENST00000473376 ZNF385AQ96PM9 386 aaKnown RBP11.82□□□□□ -0.52
CHD3-209ENST00000473376 SLC38A2Q96QD8 506 aa11.82□□□□□ -0.52
CHD3-209ENST00000473376 KCNS3Q9BQ31 491 aa11.82□□□□□ -0.52
CHD3-209ENST00000473376 PARD6BQ9BYG5 372 aa11.82□□□□□ -0.52
CHD3-209ENST00000473376 KCNK9Q9NPC2 374 aa11.82□□□□□ -0.52
CHD3-209ENST00000473376 RLIMQ9NVW2 624 aa11.82□□□□□ -0.52
CHD3-209ENST00000473376 RTTNQ86VV8 2226 aa11.82□□□□□ -0.52
CHD3-209ENST00000473376 A0A1W2PR80 420 aa11.81□□□□□ -0.52
CHD3-209ENST00000473376 RNF212BA8MTL3 300 aa11.81□□□□□ -0.52
CHD3-209ENST00000473376 KLF11O14901 512 aa11.81□□□□□ -0.52
CHD3-209ENST00000473376 FRS3O43559 492 aa11.81□□□□□ -0.52
CHD3-209ENST00000473376 GPRIN2O60269 458 aa11.81□□□□□ -0.52
CHD3-209ENST00000473376 KRT33AO76009 404 aa11.81□□□□□ -0.52
CHD3-209ENST00000473376 IGKV3-15P01624 115 aa11.81□□□□□ -0.52
CHD3-209ENST00000473376 IGLV1-44P01699 117 aa11.81□□□□□ -0.52
CHD3-209ENST00000473376 ETS2P15036 469 aa11.81□□□□□ -0.52
CHD3-209ENST00000473376 EPHA3P29320 983 aa11.81□□□□□ -0.52
CHD3-209ENST00000473376 SERPINF1P36955 418 aa11.81□□□□□ -0.52
CHD3-209ENST00000473376 PPOXP50336 477 aa11.81□□□□□ -0.52
CHD3-209ENST00000473376 PDLIM4P50479 330 aa11.81□□□□□ -0.52
CHD3-209ENST00000473376 DSTNP60981 165 aa11.81□□□□□ -0.52
CHD3-209ENST00000473376 UBE2NP61088 152 aaKnown RBP11.81□□□□□ -0.52
CHD3-209ENST00000473376 SLC25A3Q00325 362 aa11.81□□□□□ -0.52
CHD3-209ENST00000473376 POU3F1Q03052 451 aaPredicted RBP11.81□□□□□ -0.52
CHD3-209ENST00000473376 TBRG1Q3YBR2 411 aa11.81□□□□□ -0.52
CHD3-209ENST00000473376 CEP85LQ5SZL2 805 aa11.81□□□□□ -0.52
CHD3-209ENST00000473376 HHATQ5VTY9 493 aa11.81□□□□□ -0.52
CHD3-209ENST00000473376 LSMEM1Q8N8F7 131 aa11.81□□□□□ -0.52
CHD3-209ENST00000473376 NUP37Q8NFH4 326 aa11.81□□□□□ -0.52
CHD3-209ENST00000473376 OR6S1Q8NH40 331 aa11.81□□□□□ -0.52
CHD3-209ENST00000473376 BCL2L2Q92843 193 aaPredicted RBP11.81□□□□□ -0.52
CHD3-209ENST00000473376 C3orf49Q96BT1 292 aa11.81□□□□□ -0.52
CHD3-209ENST00000473376 AURKBQ96GD4 344 aaPredicted RBP11.81□□□□□ -0.52
CHD3-209ENST00000473376 KCNK17Q96T54 332 aa11.81□□□□□ -0.52
CHD3-209ENST00000473376 BEX2Q9BXY8 128 aa11.81□□□□□ -0.52
CHD3-209ENST00000473376 ZNF442Q9H7R0 627 aa11.81□□□□□ -0.52
CHD3-209ENST00000473376 EVA1AQ9H8M9 152 aa11.81□□□□□ -0.52
CHD3-209ENST00000473376 ZNF443Q9Y2A4 671 aaPredicted RBP11.81□□□□□ -0.52
CHD3-209ENST00000473376 IGHV1-18A0A0C4DH31 117 aa11.8□□□□□ -0.52
CHD3-209ENST00000473376 FTCDNL1E5RQL4 147 aa11.8□□□□□ -0.52
CHD3-209ENST00000473376 ATP6V1G2-DDX39BF2Z307 99 aa11.8□□□□□ -0.52
CHD3-209ENST00000473376 ZNF432O94892 652 aa11.8□□□□□ -0.52
CHD3-209ENST00000473376 AHSA1O95433 338 aa11.8□□□□□ -0.52
CHD3-209ENST00000473376 ANP32DO95626 131 aa11.8□□□□□ -0.52
CHD3-209ENST00000473376 GSNP06396 782 aa11.8□□□□□ -0.52
CHD3-209ENST00000473376 PTNP21246 168 aa11.8□□□□□ -0.52
CHD3-209ENST00000473376 CRATP43155 626 aa11.8□□□□□ -0.52
CHD3-209ENST00000473376 NR4A2P43354 598 aa11.8□□□□□ -0.52
CHD3-209ENST00000473376 WDR4P57081 412 aaKnown RBP11.8□□□□□ -0.52
CHD3-209ENST00000473376 MFSD13AQ14CX5 517 aa11.8□□□□□ -0.52
CHD3-209ENST00000473376 HMGN2P46Q86SG4 172 aa11.8□□□□□ -0.52
CHD3-209ENST00000473376 GPAT4Q86UL3 456 aa11.8□□□□□ -0.52
CHD3-209ENST00000473376 VRK2Q86Y07 508 aa11.8□□□□□ -0.52
CHD3-209ENST00000473376 EPHX4Q8IUS5 362 aa11.8□□□□□ -0.52
CHD3-209ENST00000473376 ADPRHL1Q8NDY3 354 aa11.8□□□□□ -0.52
CHD3-209ENST00000473376 PIMREGQ9BSJ6 248 aa11.8□□□□□ -0.52
CHD3-209ENST00000473376 REPIN1Q9BWE0 567 aaKnown RBP11.8□□□□□ -0.52
CHD3-209ENST00000473376 C1QTNF6Q9BXI9 259 aa11.8□□□□□ -0.52
CHD3-209ENST00000473376 PLK3Q9H4B4 646 aa11.8□□□□□ -0.52
CHD3-209ENST00000473376 WDR55Q9H6Y2 383 aaPredicted RBP11.8□□□□□ -0.52
CHD3-209ENST00000473376 A4GALTQ9NPC4 353 aa11.8□□□□□ -0.52
CHD3-209ENST00000473376 CA10Q9NS85 328 aa11.8□□□□□ -0.52
CHD3-209ENST00000473376 MOKQ9UQ07 419 aa11.8□□□□□ -0.52
CHD3-209ENST00000473376 CHST2Q9Y4C5 530 aa11.8□□□□□ -0.52
CHD3-209ENST00000473376 ALPK2Q86TB3 2170 aa11.79□□□□□ -0.52
CHD3-209ENST00000473376 LMX1BO60663 402 aa11.79□□□□□ -0.52
CHD3-209ENST00000473376 C1QCP02747 245 aa11.79□□□□□ -0.52
CHD3-209ENST00000473376 BCHEP06276 602 aa11.79□□□□□ -0.52
CHD3-209ENST00000473376 GKN3PP0CG01 181 aa11.79□□□□□ -0.52
CHD3-209ENST00000473376 IGHV4-31P0DP07 118 aa11.79□□□□□ -0.52
CHD3-209ENST00000473376 PNMTP11086 282 aa11.79□□□□□ -0.52
CHD3-209ENST00000473376 ETFAP13804 333 aa11.79□□□□□ -0.52
CHD3-209ENST00000473376 CBR1P16152 277 aa11.79□□□□□ -0.52
CHD3-209ENST00000473376 NCF2P19878 526 aaPredicted RBP11.79□□□□□ -0.52
CHD3-209ENST00000473376 PRKAR1BP31321 381 aa11.79□□□□□ -0.52
CHD3-209ENST00000473376 NME5P56597 212 aa11.79□□□□□ -0.52
CHD3-209ENST00000473376 NAAAQ02083 359 aa11.79□□□□□ -0.52
CHD3-209ENST00000473376 RGNQ15493 299 aa11.79□□□□□ -0.52
CHD3-209ENST00000473376 HIKESHIQ53FT3 197 aa11.79□□□□□ -0.52
CHD3-209ENST00000473376 C9orf135Q5VTT2 229 aa11.79□□□□□ -0.52
CHD3-209ENST00000473376 UGT2A3Q6UWM9 527 aa11.79□□□□□ -0.52
CHD3-209ENST00000473376 CLIP4Q8N3C7 705 aa11.79□□□□□ -0.52
CHD3-209ENST00000473376 CADM2Q8N3J6 435 aa11.79□□□□□ -0.52
CHD3-209ENST00000473376 BHLHE22Q8NFJ8 381 aaPredicted RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms