RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	COX16	Q9P0S2	106 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	PIGL	Q9Y2B2	252 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	FANCI	Q9NVI1	1328 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	FAM240B	A0A1B0GVZ2	78 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	PINLYP	A6NC86	204 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	TRIM49D1	C9J1S8	452 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	AGPAT2	O15120	278 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	MBTPS2	O43462	519 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	TIMM8A	O60220	97 aa	Predicted RBP	2.55	□□□□□ -2
PTCD3-209	ENST00000472044	FAM189A1	O60320	539 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	OPN1MW	P04001	364 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	KLK3	P07288	261 aa	Predicted RBP	2.55	□□□□□ -2
PTCD3-209	ENST00000472044	OPN1MW2	P0DN77	364 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	OPN1MW3	P0DN78	364 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	NCK1	P16333	377 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	MGMT	P16455	207 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	TBP	P20226	339 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	CMA1	P23946	247 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	ATP1B3	P54709	279 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	TAS2R19	P59542	299 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	CDK16	Q00536	496 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	OR5I1	Q13606	314 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	GPNMB	Q14956	572 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	ZNF630	Q2M218	657 aa	Predicted RBP	2.55	□□□□□ -2
PTCD3-209	ENST00000472044	CEP55	Q53EZ4	464 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	MARCH8	Q5T0T0	291 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	KRTAP11-1	Q8IUC1	163 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	PNKD	Q8N490	385 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	RNF175	Q8N4F7	328 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	CMTM7	Q96FZ5	175 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	ITCH	Q96J02	903 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	KCNA7	Q96RP8	456 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	TSG101	Q99816	390 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	HES7	Q9BYE0	225 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	OR11A1	Q9GZK7	315 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	NXF3	Q9H4D5	531 aa	Known RBP	2.55	□□□□□ -2
PTCD3-209	ENST00000472044	SGK2	Q9HBY8	427 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	POLE4	Q9NR33	117 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	BFAR	Q9NZS9	450 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	TMCO1	Q9UM00	188 aa		2.55	□□□□□ -2
PTCD3-209	ENST00000472044	SYNJ2BP-COX16	A0A087WUM0	186 aa		2.54	□□□□□ -2
PTCD3-209	ENST00000472044	CCDC182	A6NF36	153 aa		2.54	□□□□□ -2
PTCD3-209	ENST00000472044	TRAF3IP2	O43734	574 aa	Predicted RBP	2.54	□□□□□ -2
PTCD3-209	ENST00000472044	B4GALT2	O60909	372 aa		2.54	□□□□□ -2
PTCD3-209	ENST00000472044	OXSR1	O95747	527 aa	Predicted RBP	2.54	□□□□□ -2
PTCD3-209	ENST00000472044		P04436	131 aa		2.54	□□□□□ -2
PTCD3-209	ENST00000472044	CHTF8	P0CG12	524 aa		2.54	□□□□□ -2
PTCD3-209	ENST00000472044	ICAM2	P13598	275 aa		2.54	□□□□□ -2
PTCD3-209	ENST00000472044	ZNF17	P17021	662 aa		2.54	□□□□□ -2
PTCD3-209	ENST00000472044	MDK	P21741	143 aa	Predicted RBP	2.54	□□□□□ -2
PTCD3-209	ENST00000472044	NUDT1	P36639	197 aa		2.54	□□□□□ -2
PTCD3-209	ENST00000472044	EPS15	P42566	896 aa		2.54	□□□□□ -2
PTCD3-209	ENST00000472044	GPM6A	P51674	278 aa		2.54	□□□□□ -2
PTCD3-209	ENST00000472044	PRPS1	P60891	318 aa		2.54	□□□□□ -2
PTCD3-209	ENST00000472044	RPL23A	P62750	156 aa	Known RBP	2.54	□□□□□ -2
PTCD3-209	ENST00000472044	OGDH	Q02218	1023 aa		2.54	□□□□□ -2
PTCD3-209	ENST00000472044	GNMT	Q14749	295 aa		2.54	□□□□□ -2
PTCD3-209	ENST00000472044	ATP6AP1	Q15904	470 aa		2.54	□□□□□ -2
PTCD3-209	ENST00000472044	NRF1	Q16656	503 aa		2.54	□□□□□ -2
PTCD3-209	ENST00000472044	DGUOK	Q16854	277 aa		2.54	□□□□□ -2
PTCD3-209	ENST00000472044	FAM43B	Q6ZT52	329 aa	Predicted RBP	2.54	□□□□□ -2
PTCD3-209	ENST00000472044	ZNF571	Q7Z3V5	609 aa	Predicted RBP	2.54	□□□□□ -2
PTCD3-209	ENST00000472044	SLC26A11	Q86WA9	606 aa		2.54	□□□□□ -2
PTCD3-209	ENST00000472044	RPUSD4	Q96CM3	377 aa	Known RBP	2.54	□□□□□ -2
PTCD3-209	ENST00000472044	TIMD4	Q96H15	378 aa		2.54	□□□□□ -2
PTCD3-209	ENST00000472044	MBOAT4	Q96T53	435 aa		2.54	□□□□□ -2
PTCD3-209	ENST00000472044	RIOK2	Q9BVS4	552 aa	Known RBP	2.54	□□□□□ -2
PTCD3-209	ENST00000472044	RANBP3	Q9H6Z4	567 aa	Predicted RBP	2.54	□□□□□ -2
PTCD3-209	ENST00000472044	IL26	Q9NPH9	171 aa		2.54	□□□□□ -2
PTCD3-209	ENST00000472044	SEC14L3	Q9UDX4	400 aa		2.54	□□□□□ -2
PTCD3-209	ENST00000472044	MTRF1L	Q9UGC7	380 aa	Known RBP	2.54	□□□□□ -2
PTCD3-209	ENST00000472044	ZNF639	Q9UID6	485 aa		2.54	□□□□□ -2
PTCD3-209	ENST00000472044	ASB3	Q9Y575	518 aa		2.54	□□□□□ -2
PTCD3-209	ENST00000472044	MTCL1	Q9Y4B5	1905 aa	Known RBP	2.53	□□□□□ -2
PTCD3-209	ENST00000472044	NSG1	A0A0A6YYJ2	146 aa		2.53	□□□□□ -2
PTCD3-209	ENST00000472044		A0A1B0GUA9	196 aa		2.53	□□□□□ -2
PTCD3-209	ENST00000472044		A0A1W2PPE3	182 aa		2.53	□□□□□ -2
PTCD3-209	ENST00000472044	OR5B21	A6NL26	309 aa		2.53	□□□□□ -2
PTCD3-209	ENST00000472044	OR52A4P	A6NMU1	304 aa		2.53	□□□□□ -2
PTCD3-209	ENST00000472044	GOLGA8S	H3BPF8	625 aa		2.53	□□□□□ -2
PTCD3-209	ENST00000472044	IGHV4-34	P06331	123 aa		2.53	□□□□□ -2
PTCD3-209	ENST00000472044	AZU1	P20160	251 aa		2.53	□□□□□ -2
PTCD3-209	ENST00000472044	CD1C	P29017	333 aa		2.53	□□□□□ -2
PTCD3-209	ENST00000472044	CDH4	P55283	916 aa		2.53	□□□□□ -2
PTCD3-209	ENST00000472044	MPPED2	Q15777	294 aa		2.53	□□□□□ -2
PTCD3-209	ENST00000472044	BOLA3	Q53S33	107 aa		2.53	□□□□□ -2
PTCD3-209	ENST00000472044	C6orf226	Q5I0X4	101 aa		2.53	□□□□□ -2
PTCD3-209	ENST00000472044	CTRB2	Q6GPI1	263 aa		2.53	□□□□□ -2
PTCD3-209	ENST00000472044	ZNF530	Q6P9A1	599 aa	Predicted RBP	2.53	□□□□□ -2
PTCD3-209	ENST00000472044	ENPP6	Q6UWR7	440 aa		2.53	□□□□□ -2
PTCD3-209	ENST00000472044	UTS2B	Q765I0	119 aa		2.53	□□□□□ -2
PTCD3-209	ENST00000472044	H2BFWT	Q7Z2G1	175 aa		2.53	□□□□□ -2
PTCD3-209	ENST00000472044	NUDCD3	Q8IVD9	361 aa		2.53	□□□□□ -2
PTCD3-209	ENST00000472044	OR8J1	Q8NGP2	316 aa		2.53	□□□□□ -2
PTCD3-209	ENST00000472044	FAM151A	Q8WW52	585 aa		2.53	□□□□□ -2
PTCD3-209	ENST00000472044	ACOT11	Q8WXI4	607 aa	Predicted RBP	2.53	□□□□□ -2
PTCD3-209	ENST00000472044	FGF14	Q92915	247 aa		2.53	□□□□□ -2
PTCD3-209	ENST00000472044	NT5C3B	Q969T7	300 aa		2.53	□□□□□ -2
PTCD3-209	ENST00000472044	FCRL1	Q96LA6	429 aa		2.53	□□□□□ -2
PTCD3-209	ENST00000472044	TMEM246	Q9BRR3	403 aa		2.53	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms