RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 TRIM63Q969Q1 353 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 SMIM19Q96E16 107 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 FKRPQ9H9S5 495 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 NCDNQ9UBB6 729 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 ICAM5Q9UMF0 924 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 TVP23AA6NH52 213 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 OR2T7P0C7T2 308 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 CFL1P23528 166 aaKnown RBP17.42■□□□□ 0.38
VIM-203ENST00000469543 DIO1P49895 249 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 KANSL1Q7Z3B3 1105 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 OR2T27Q8NH04 317 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 OR2B2Q9GZK3 357 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 PDE7BQ9NP56 450 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 LANCL2Q9NS86 450 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 GMEB2Q9UKD1 530 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 PLCL2Q9UPR0 1127 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 BAIAP2Q9UQB8 552 aa17.42■□□□□ 0.38
VIM-203ENST00000469543 EFCAB7A8K855 629 aa17.41■□□□□ 0.38
VIM-203ENST00000469543 PIN1P1O15428 100 aa17.41■□□□□ 0.38
VIM-203ENST00000469543 EPXP11678 715 aa17.41■□□□□ 0.38
VIM-203ENST00000469543 NME1P15531 152 aaKnown RBP17.41■□□□□ 0.38
VIM-203ENST00000469543 NPR2P20594 1047 aa17.41■□□□□ 0.38
VIM-203ENST00000469543 HSD17B7P56937 341 aa17.41■□□□□ 0.38
VIM-203ENST00000469543 DGCR2P98153 550 aa17.41■□□□□ 0.38
VIM-203ENST00000469543 SF3A2Q15428 464 aaKnown RBP17.41■□□□□ 0.38
VIM-203ENST00000469543 DPY19L2P2Q6ZN68 376 aa17.41■□□□□ 0.38
VIM-203ENST00000469543 NOXA1Q86UR1 476 aa17.41■□□□□ 0.38
VIM-203ENST00000469543 SERPINA12Q8IW75 414 aa17.41■□□□□ 0.38
VIM-203ENST00000469543 OR6C4Q8NGE1 309 aa17.41■□□□□ 0.38
VIM-203ENST00000469543 ACOT12Q8WYK0 555 aa17.41■□□□□ 0.38
VIM-203ENST00000469543 FOXQ1Q9C009 403 aa17.41■□□□□ 0.38
VIM-203ENST00000469543 NANSQ9NR45 359 aa17.41■□□□□ 0.38
VIM-203ENST00000469543 MRPL15Q9P015 296 aaKnown RBP17.41■□□□□ 0.38
VIM-203ENST00000469543 TMEM72A0PK05 275 aa17.41■□□□□ 0.38
VIM-203ENST00000469543 ARSBP15848 533 aa17.41■□□□□ 0.38
VIM-203ENST00000469543 ACTC1P68032 377 aa17.41■□□□□ 0.38
VIM-203ENST00000469543 ACTA1P68133 377 aa17.41■□□□□ 0.38
VIM-203ENST00000469543 LINC01590Q5TEZ4 76 aa17.41■□□□□ 0.38
VIM-203ENST00000469543 C1orf189Q5VU69 101 aa17.41■□□□□ 0.38
VIM-203ENST00000469543 ZNF433Q8N7K0 673 aaPredicted RBP17.41■□□□□ 0.38
VIM-203ENST00000469543 RFT1Q96AA3 541 aa17.41■□□□□ 0.38
VIM-203ENST00000469543 MARVELD1Q9BSK0 173 aa17.41■□□□□ 0.38
VIM-203ENST00000469543 NOX4Q9NPH5 578 aa17.41■□□□□ 0.38
VIM-203ENST00000469543 ZNF337Q9Y3M9 751 aa17.41■□□□□ 0.38
VIM-203ENST00000469543 INMT-MINDY4F8WBC2 141 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 OGG1O15527 345 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 CPNE3O75131 537 aaKnown RBP17.4■□□□□ 0.38
VIM-203ENST00000469543 ICOSLGO75144 302 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 OR2B3O76000 313 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 OR7A10O76100 309 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 ZFPL1O95159 310 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 SYPP08247 313 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 PTHLHP12272 177 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 BTCP35070 178 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 SNRPD2P62316 118 aaKnown RBP17.4■□□□□ 0.38
VIM-203ENST00000469543 RIN1Q13671 783 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 HES5Q5TA89 166 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 OR14A16Q8NHC5 309 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 RNF166Q96A37 237 aaPredicted RBP17.4■□□□□ 0.38
VIM-203ENST00000469543 UBL7Q96S82 380 aaPredicted RBP17.4■□□□□ 0.38
VIM-203ENST00000469543 ALG12Q9BV10 488 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 ANKRD10Q9NXR5 420 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 ADAM30Q9UKF2 790 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 TMEM150CB9EJG8 249 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 ZNF749O43361 778 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 ANKRD34CP0C6C1 535 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 GBX2P52951 348 aaPredicted RBP17.4■□□□□ 0.38
VIM-203ENST00000469543 CLDN20P56880 219 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 CTXN1P60606 82 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 CFHR1Q03591 330 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 SKP2Q13309 424 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 UBXN2BQ14CS0 331 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 SLC36A2Q495M3 483 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 CDONQ4KMG0 1287 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 BCL2L15Q5TBC7 163 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 C16orf47Q6ZP98 133 aaPredicted RBP17.4■□□□□ 0.38
VIM-203ENST00000469543 UBQLN4Q9NRR5 601 aa17.4■□□□□ 0.38
VIM-203ENST00000469543 A0A1W2PR77 199 aa17.39■□□□□ 0.37
VIM-203ENST00000469543 UTS2O95399 124 aa17.39■□□□□ 0.37
VIM-203ENST00000469543 OR8G3PP0DMU2 310 aa17.39■□□□□ 0.37
VIM-203ENST00000469543 AHCYP23526 432 aa17.39■□□□□ 0.37
VIM-203ENST00000469543 SLC6A1P30531 599 aa17.39■□□□□ 0.37
VIM-203ENST00000469543 TAS2R43P59537 309 aa17.39■□□□□ 0.37
VIM-203ENST00000469543 RPS4XP62701 263 aaKnown RBP17.39■□□□□ 0.37
VIM-203ENST00000469543 CDK10Q15131 360 aa17.39■□□□□ 0.37
VIM-203ENST00000469543 ZNF74Q16587 644 aa17.39■□□□□ 0.37
VIM-203ENST00000469543 ATG4DQ86TL0 474 aaPredicted RBP17.39■□□□□ 0.37
VIM-203ENST00000469543 MARCH3Q86UD3 253 aa17.39■□□□□ 0.37
VIM-203ENST00000469543 MS4A15Q8N5U1 240 aa17.39■□□□□ 0.37
VIM-203ENST00000469543 SNX18Q96RF0 628 aa17.39■□□□□ 0.37
VIM-203ENST00000469543 LPAR4Q99677 370 aa17.39■□□□□ 0.37
VIM-203ENST00000469543 GFI1Q99684 422 aa17.39■□□□□ 0.37
VIM-203ENST00000469543 NOX1Q9Y5S8 564 aa17.39■□□□□ 0.37
VIM-203ENST00000469543 AKR7A2O43488 359 aa17.39■□□□□ 0.37
VIM-203ENST00000469543 UBL4AP11441 157 aa17.39■□□□□ 0.37
VIM-203ENST00000469543 TACR3P29371 465 aa17.39■□□□□ 0.37
VIM-203ENST00000469543 CCR6P51684 374 aa17.39■□□□□ 0.37
VIM-203ENST00000469543 EFR3AQ14156 821 aa17.39■□□□□ 0.37
VIM-203ENST00000469543 ZNF563Q8TA94 476 aa17.39■□□□□ 0.37
VIM-203ENST00000469543 SLC2A12Q8TD20 617 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms