RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 SMNDC1O75940 238 aaKnown RBP eCLIP10.63□□□□□ -0.712e-10■■□□□ 12.2
VPS13D-204ENST00000469054 VAMP5O95183 116 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 MT-ATP6P00846 226 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 IGF2P01344 180 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 BGLAPP02818 100 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 MT-ND1P03886 318 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 FABP3P05413 133 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 CD8BP10966 210 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 CBLP22681 906 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 GRPRP30550 384 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 ASCL1P50553 236 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 UGT2B15P54855 530 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 SLC17A1Q14916 467 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 TRAM2Q15035 370 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 ZNF74Q16587 644 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 FBXL19-AS1Q494R0 122 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 TMEM225Q6GV28 225 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 H1FNTQ75WM6 255 aaPredicted RBP10.63□□□□□ -0.71
VPS13D-204ENST00000469054 LUZP2Q86TE4 346 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 AQP12AQ8IXF9 295 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 C10orf53Q8N6V4 93 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 SCAIQ8N9R8 606 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 ZNF417Q8TAU3 575 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 ZNF775Q96BV0 537 aaPredicted RBP10.63□□□□□ -0.71
VPS13D-204ENST00000469054 MOGAT1Q96PD6 335 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 ZNF587Q96SQ5 575 aaPredicted RBP10.63□□□□□ -0.71
VPS13D-204ENST00000469054 SEPHS2Q99611 448 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 PIP5K1AQ99755 562 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 KLHL4Q9C0H6 718 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 MAGIXQ9H6Y5 334 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 CHST11Q9NPF2 352 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 MEPEQ9NQ76 525 aaPredicted RBP10.63□□□□□ -0.71
VPS13D-204ENST00000469054 MAN2C1Q9NTJ4 1040 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 EMC3Q9P0I2 261 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 C6orf203Q9P0P8 240 aaPredicted RBP10.63□□□□□ -0.71
VPS13D-204ENST00000469054 SLC7A8Q9UHI5 535 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 POMPQ9Y244 141 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 RASD1Q9Y272 281 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 B3GALT5Q9Y2C3 310 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 MED31Q9Y3C7 131 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 PCNX1Q96RV3 2341 aa10.63□□□□□ -0.71
VPS13D-204ENST00000469054 DIRAS1O95057 198 aa10.62□□□□□ -0.71
VPS13D-204ENST00000469054 CH25HO95992 272 aa10.62□□□□□ -0.71
VPS13D-204ENST00000469054 H1F0P07305 194 aaKnown RBP10.62□□□□□ -0.71
VPS13D-204ENST00000469054 CHRNB3Q05901 458 aa10.62□□□□□ -0.71
VPS13D-204ENST00000469054 FLOT2Q14254 428 aa10.62□□□□□ -0.71
VPS13D-204ENST00000469054 FAM98BQ52LJ0 330 aaKnown RBP10.62□□□□□ -0.71
VPS13D-204ENST00000469054 ZNF474Q6S9Z5 364 aaPredicted RBP10.62□□□□□ -0.71
VPS13D-204ENST00000469054 ASRGL1Q7L266 308 aa10.62□□□□□ -0.71
VPS13D-204ENST00000469054 PIWIL3Q7Z3Z3 882 aaKnown RBP10.62□□□□□ -0.71
VPS13D-204ENST00000469054 NUFIP2Q7Z417 695 aaKnown RBP10.62□□□□□ -0.71
VPS13D-204ENST00000469054 GALNT5Q7Z7M9 940 aa10.62□□□□□ -0.71
VPS13D-204ENST00000469054 GPAT4Q86UL3 456 aa10.62□□□□□ -0.71
VPS13D-204ENST00000469054 ZDHHC21Q8IVQ6 265 aa10.62□□□□□ -0.71
VPS13D-204ENST00000469054 RNF113BQ8IZP6 322 aaKnown RBP10.62□□□□□ -0.71
VPS13D-204ENST00000469054 ZNF610Q8N9Z0 462 aa10.62□□□□□ -0.71
VPS13D-204ENST00000469054 PFN4Q8NHR9 129 aa10.62□□□□□ -0.71
VPS13D-204ENST00000469054 ACOT11Q8WXI4 607 aaPredicted RBP10.62□□□□□ -0.71
VPS13D-204ENST00000469054 LRRC46Q96FV0 321 aa10.62□□□□□ -0.71
VPS13D-204ENST00000469054 DHRS1Q96LJ7 313 aa10.62□□□□□ -0.71
VPS13D-204ENST00000469054 ZNF347Q96SE7 839 aa10.62□□□□□ -0.71
VPS13D-204ENST00000469054 ASPNQ9BXN1 380 aa10.62□□□□□ -0.71
VPS13D-204ENST00000469054 KRTAP3-3Q9BYR6 98 aa10.62□□□□□ -0.71
VPS13D-204ENST00000469054 KRTAP3-2Q9BYR7 98 aa10.62□□□□□ -0.71
VPS13D-204ENST00000469054 OPN3Q9H1Y3 402 aaPredicted RBP10.62□□□□□ -0.71
VPS13D-204ENST00000469054 ANKRD19PQ9H560 264 aa10.62□□□□□ -0.71
VPS13D-204ENST00000469054 C12orf49Q9H741 205 aa10.62□□□□□ -0.71
VPS13D-204ENST00000469054 FKRPQ9H9S5 495 aa10.62□□□□□ -0.71
VPS13D-204ENST00000469054 NANSQ9NR45 359 aa10.62□□□□□ -0.71
VPS13D-204ENST00000469054 MRPL39Q9NYK5 338 aaKnown RBP10.62□□□□□ -0.71
VPS13D-204ENST00000469054 SEC14L4Q9UDX3 406 aa10.62□□□□□ -0.71
VPS13D-204ENST00000469054 PLEKHB1Q9UF11 243 aaPredicted RBP10.62□□□□□ -0.71
VPS13D-204ENST00000469054 FOXD3Q9UJU5 478 aaPredicted RBP10.62□□□□□ -0.71
VPS13D-204ENST00000469054 USP9XQ93008 2570 aaPredicted RBP10.62□□□□□ -0.71
VPS13D-204ENST00000469054 DOPEY1Q5JWR5 2465 aa10.61□□□□□ -0.71
VPS13D-204ENST00000469054 A0A087WUU8 490 aa10.61□□□□□ -0.71
VPS13D-204ENST00000469054 A0A1W2PRQ8 180 aa10.61□□□□□ -0.71
VPS13D-204ENST00000469054 HTR3EA5X5Y0 456 aa10.61□□□□□ -0.71
VPS13D-204ENST00000469054 ENO4A6NNW6 628 aa10.61□□□□□ -0.71
VPS13D-204ENST00000469054 C19orf84I3L1E1 186 aa10.61□□□□□ -0.71
VPS13D-204ENST00000469054 UMPSP11172 480 aa10.61□□□□□ -0.71
VPS13D-204ENST00000469054 GRNP28799 593 aaKnown RBP10.61□□□□□ -0.71
VPS13D-204ENST00000469054 MAGEA2P43356 314 aa10.61□□□□□ -0.71
VPS13D-204ENST00000469054 SMIM11AP58511 58 aa10.61□□□□□ -0.71
VPS13D-204ENST00000469054 LSM11P83369 360 aaKnown RBP eCLIP10.61□□□□□ -0.71
VPS13D-204ENST00000469054 PMS2P3Q13401 168 aa10.61□□□□□ -0.71
VPS13D-204ENST00000469054 DGCR6Q14129 220 aa10.61□□□□□ -0.71
VPS13D-204ENST00000469054 POU4F3Q15319 338 aa10.61□□□□□ -0.71
VPS13D-204ENST00000469054 ZNF730Q6ZMV8 503 aa10.61□□□□□ -0.71
VPS13D-204ENST00000469054 SLC46A3Q7Z3Q1 461 aa10.61□□□□□ -0.71
VPS13D-204ENST00000469054 STK32CQ86UX6 486 aa10.61□□□□□ -0.71
VPS13D-204ENST00000469054 NRMQ8IXM6 262 aa10.61□□□□□ -0.71
VPS13D-204ENST00000469054 KDM8Q8N371 416 aa10.61□□□□□ -0.71
VPS13D-204ENST00000469054 ZNF454Q8N9F8 522 aa10.61□□□□□ -0.71
VPS13D-204ENST00000469054 ADPRHL1Q8NDY3 354 aa10.61□□□□□ -0.71
VPS13D-204ENST00000469054 OR9K2Q8NGE7 335 aa10.61□□□□□ -0.71
VPS13D-204ENST00000469054 OR5J2Q8NH18 312 aa10.61□□□□□ -0.71
VPS13D-204ENST00000469054 SLC7A13Q8TCU3 470 aa10.61□□□□□ -0.71
VPS13D-204ENST00000469054 RNASE6Q93091 150 aaKnown RBP10.61□□□□□ -0.71
VPS13D-204ENST00000469054 SGTBQ96EQ0 304 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms