RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 TMBIM4Q9HC24 238 aa21.38■■□□□ 1.01
PTCH1-210ENST00000468211 NKIRAS1Q9NYS0 192 aa21.38■■□□□ 1.01
PTCH1-210ENST00000468211 EGR4Q05215 589 aa21.37■■□□□ 1.01
PTCH1-210ENST00000468211 MST1LQ2TV78 715 aa21.37■■□□□ 1.01
PTCH1-210ENST00000468211 ZNF311Q5JNZ3 666 aa21.37■■□□□ 1.01
PTCH1-210ENST00000468211 HIPK1Q86Z02 1210 aa21.37■■□□□ 1.01
PTCH1-210ENST00000468211 MIER2Q8N344 545 aa21.37■■□□□ 1.01
PTCH1-210ENST00000468211 KDM8Q8N371 416 aa21.37■■□□□ 1.01
PTCH1-210ENST00000468211 BOD1Q96IK1 185 aa21.37■■□□□ 1.01
PTCH1-210ENST00000468211 ALKBH3Q96Q83 286 aaPredicted RBP21.37■■□□□ 1.01
PTCH1-210ENST00000468211 PTDSS2Q9BVG9 487 aa21.37■■□□□ 1.01
PTCH1-210ENST00000468211 PIF1Q9H611 641 aa21.37■■□□□ 1.01
PTCH1-210ENST00000468211 SEC14L4Q9UDX3 406 aa21.37■■□□□ 1.01
PTCH1-210ENST00000468211 PRDM4Q9UKN5 801 aa21.37■■□□□ 1.01
PTCH1-210ENST00000468211 ZNF232Q9UNY5 417 aa21.37■■□□□ 1.01
PTCH1-210ENST00000468211 IGHV1-18A0A0C4DH31 117 aa21.36■■□□□ 1.01
PTCH1-210ENST00000468211 ELOA3DA6NLF2 546 aaPredicted RBP21.36■■□□□ 1.01
PTCH1-210ENST00000468211 FTCDNL1E5RQL4 147 aa21.36■■□□□ 1.01
PTCH1-210ENST00000468211 UPK3AO75631 287 aa21.36■■□□□ 1.01
PTCH1-210ENST00000468211 APOBEC3AP31941 199 aaPredicted RBP21.36■■□□□ 1.01
PTCH1-210ENST00000468211 TMEM249Q2WGJ8 235 aa21.36■■□□□ 1.01
PTCH1-210ENST00000468211 ELOA3BQ3SY89 546 aa21.36■■□□□ 1.01
PTCH1-210ENST00000468211 TBRG1Q3YBR2 411 aa21.36■■□□□ 1.01
PTCH1-210ENST00000468211 PRAMEF8Q5VWM4 474 aa21.36■■□□□ 1.01
PTCH1-210ENST00000468211 PRAMEF7Q5VXH5 474 aa21.36■■□□□ 1.01
PTCH1-210ENST00000468211 EPGNQ6UW88 154 aa21.36■■□□□ 1.01
PTCH1-210ENST00000468211 COMTD1Q86VU5 262 aa21.36■■□□□ 1.01
PTCH1-210ENST00000468211 C10orf111Q8N326 155 aa21.36■■□□□ 1.01
PTCH1-210ENST00000468211 ELOA3Q8NG57 546 aa21.36■■□□□ 1.01
PTCH1-210ENST00000468211 OR1K1Q8NGR3 316 aa21.36■■□□□ 1.01
PTCH1-210ENST00000468211 BCL2L10Q9HD36 194 aa21.36■■□□□ 1.01
PTCH1-210ENST00000468211 IFT52Q9Y366 437 aa21.36■■□□□ 1.01
PTCH1-210ENST00000468211 USH1CQ9Y6N9 552 aa21.36■■□□□ 1.01
PTCH1-210ENST00000468211 CLIC1O00299 241 aa21.35■■□□□ 1.01
PTCH1-210ENST00000468211 NR5A2O00482 541 aa21.35■■□□□ 1.01
PTCH1-210ENST00000468211 WNT11O96014 354 aa21.35■■□□□ 1.01
PTCH1-210ENST00000468211 BMP2P12643 396 aa21.35■■□□□ 1.01
PTCH1-210ENST00000468211 TUBA1BP68363 451 aa21.35■■□□□ 1.01
PTCH1-210ENST00000468211 TUBA4AP68366 448 aa21.35■■□□□ 1.01
PTCH1-210ENST00000468211 ZSWIM7Q19AV6 140 aa21.35■■□□□ 1.01
PTCH1-210ENST00000468211 NIPAL3Q6P499 406 aa21.35■■□□□ 1.01
PTCH1-210ENST00000468211 KLHL24Q6TFL4 600 aa21.35■■□□□ 1.01
PTCH1-210ENST00000468211 TUBA1AQ71U36 451 aa21.35■■□□□ 1.01
PTCH1-210ENST00000468211 MSRB3Q8IXL7 192 aa21.35■■□□□ 1.01
PTCH1-210ENST00000468211 STK35Q8TDR2 534 aa21.35■■□□□ 1.01
PTCH1-210ENST00000468211 BCL2L2Q92843 193 aaPredicted RBP21.35■■□□□ 1.01
PTCH1-210ENST00000468211 SLC25A36Q96CQ1 311 aa21.35■■□□□ 1.01
PTCH1-210ENST00000468211 KTI12Q96EK9 354 aaPredicted RBP21.35■■□□□ 1.01
PTCH1-210ENST00000468211 TNFRSF13CQ96RJ3 184 aa21.35■■□□□ 1.01
PTCH1-210ENST00000468211 NELFAQ9H3P2 528 aa21.35■■□□□ 1.01
PTCH1-210ENST00000468211 A4GALTQ9NPC4 353 aa21.35■■□□□ 1.01
PTCH1-210ENST00000468211 TMEM45AQ9NWC5 275 aa21.35■■□□□ 1.01
PTCH1-210ENST00000468211 THUMPD1Q9NXG2 353 aaKnown RBP21.35■■□□□ 1.01
PTCH1-210ENST00000468211 SLC25A37Q9NYZ2 338 aa21.35■■□□□ 1.01
PTCH1-210ENST00000468211 SLAMF8Q9P0V8 285 aa21.35■■□□□ 1.01
PTCH1-210ENST00000468211 MALRD1Q5VYJ5 2156 aa21.34■■□□□ 1.01
PTCH1-210ENST00000468211 A8MV72 311 aaPredicted RBP21.34■■□□□ 1.01
PTCH1-210ENST00000468211 KRT33AO76009 404 aa21.34■■□□□ 1.01
PTCH1-210ENST00000468211 VAMP5O95183 116 aa21.34■■□□□ 1.01
PTCH1-210ENST00000468211 PNMTP11086 282 aa21.34■■□□□ 1.01
PTCH1-210ENST00000468211 RPS5P46782 204 aaKnown RBP21.34■■□□□ 1.01
PTCH1-210ENST00000468211 DSCR9P59020 149 aa21.34■■□□□ 1.01
PTCH1-210ENST00000468211 SWI5Q1ZZU3 235 aa21.34■■□□□ 1.01
PTCH1-210ENST00000468211 C1QTNF12Q5T7M4 302 aa21.34■■□□□ 1.01
PTCH1-210ENST00000468211 HMBOX1Q6NT76 420 aa21.34■■□□□ 1.01
PTCH1-210ENST00000468211 FUNDC1Q8IVP5 155 aa21.34■■□□□ 1.01
PTCH1-210ENST00000468211 MFSD8Q8NHS3 518 aa21.34■■□□□ 1.01
PTCH1-210ENST00000468211 C10orf105Q8TEF2 133 aa21.34■■□□□ 1.01
PTCH1-210ENST00000468211 FBXO17Q96EF6 278 aa21.34■■□□□ 1.01
PTCH1-210ENST00000468211 RASD1Q9Y272 281 aa21.34■■□□□ 1.01
PTCH1-210ENST00000468211 FBN3Q75N90 2809 aa21.34■■□□□ 1.01
PTCH1-210ENST00000468211 A0A096LPI6 279 aa21.33■■□□□ 1.01
PTCH1-210ENST00000468211 TMEM247A6NEH6 219 aa21.33■■□□□ 1.01
PTCH1-210ENST00000468211 ZNF587BE7ETH6 402 aa21.33■■□□□ 1.01
PTCH1-210ENST00000468211 AHSA1O95433 338 aa21.33■■□□□ 1.01
PTCH1-210ENST00000468211 EFNA4P52798 201 aa21.33■■□□□ 1.01
PTCH1-210ENST00000468211 CHRNB3Q05901 458 aa21.33■■□□□ 1.01
PTCH1-210ENST00000468211 LOXL1Q08397 574 aaPredicted RBP21.33■■□□□ 1.01
PTCH1-210ENST00000468211 C6orf52Q5T4I8 152 aa21.33■■□□□ 1.01
PTCH1-210ENST00000468211 ABHD12BQ7Z5M8 362 aaPredicted RBP21.33■■□□□ 1.01
PTCH1-210ENST00000468211 FAM168AQ92567 244 aa21.33■■□□□ 1.01
PTCH1-210ENST00000468211 SLC38A2Q96QD8 506 aa21.33■■□□□ 1.01
PTCH1-210ENST00000468211 PRR14Q9BWN1 585 aa21.33■■□□□ 1.01
PTCH1-210ENST00000468211 SEC61A2Q9H9S3 476 aa21.33■■□□□ 1.01
PTCH1-210ENST00000468211 B3GAT1Q9P2W7 334 aa21.33■■□□□ 1.01
PTCH1-210ENST00000468211 A0A096LPE4 126 aa21.32■■□□□ 1
PTCH1-210ENST00000468211 A0A1W2PPZ6 126 aa21.32■■□□□ 1
PTCH1-210ENST00000468211 HTR2AP28223 471 aa21.32■■□□□ 1
PTCH1-210ENST00000468211 CLDN17P56750 224 aa21.32■■□□□ 1
PTCH1-210ENST00000468211 BEND6Q5SZJ8 279 aaPredicted RBP21.32■■□□□ 1
PTCH1-210ENST00000468211 BBS10Q8TAM1 723 aa21.32■■□□□ 1
PTCH1-210ENST00000468211 ARMC7Q9H6L4 198 aa21.32■■□□□ 1
PTCH1-210ENST00000468211 CACYBPQ9HB71 228 aaKnown RBP21.32■■□□□ 1
PTCH1-210ENST00000468211 OBP2BQ9NPH6 170 aa21.32■■□□□ 1
PTCH1-210ENST00000468211 STAB1Q9NY15 2570 aa21.31■■□□□ 1
PTCH1-210ENST00000468211 ZNF432O94892 652 aa21.31■■□□□ 1
PTCH1-210ENST00000468211 SLC25A16P16260 332 aa21.31■■□□□ 1
PTCH1-210ENST00000468211 VLDLRP98155 873 aa21.31■■□□□ 1
PTCH1-210ENST00000468211 FADDQ13158 208 aa21.31■■□□□ 1
PTCH1-210ENST00000468211 C6orf89Q6UWU4 347 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms