RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 C12orf10Q9HB07 376 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 TMEM27Q9HBJ8 222 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 ADPRHL2Q9NX46 363 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 RPS6KB2Q9UBS0 482 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 MAGEL2Q9UJ55 1249 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 SH3GLB1Q9Y371 365 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 TESMINQ9Y4I5 508 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 A0A1B0GWA3 101 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 TMEM72A0PK05 275 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 A8MV72 311 aaPredicted RBP10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 KCNAB3O43448 404 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 SPRY1O43609 319 aaPredicted RBP10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 CXCL13O43927 109 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 GMNNO75496 209 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 SERPINA1P01009 418 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 TFPIP10646 304 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 FCGR2AP12318 317 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 CCNA2P20248 432 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 CXCR1P25024 350 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 KIR2DL2P43627 348 aaPredicted RBP10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 CLK1P49759 484 aaKnown RBP10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 BNIP1Q12981 228 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 BNIP2Q12982 314 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 PON3Q15166 354 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 OR1Q1Q15612 314 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 NPTX1Q15818 432 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 DNAL1Q4LDG9 190 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 ALG10BQ5I7T1 473 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 ZNF613Q6PF04 617 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 ULK3Q6PHR2 472 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 BTLAQ7Z6A9 289 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 CARM1Q86X55 608 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 RBM45Q8IUH3 476 aaKnown RBP10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 CNEP1R1Q8N9A8 125 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 FNDC9Q8TBE3 224 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 TMEM171Q8WVE6 324 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 DNAJA4Q8WW22 397 aaPredicted RBP10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 OSTF1Q92882 214 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 CPNE4Q96A23 557 aaPredicted RBP10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 DDIT4LQ96D03 193 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 TPD52L3Q96J77 140 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 ARL5BQ96KC2 179 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 PRR14Q9BWN1 585 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 OR11A1Q9GZK7 315 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 GORASP2Q9H8Y8 452 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 TIGARQ9NQ88 270 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 ZNF226Q9NYT6 803 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 RPS6KA6Q9UK32 745 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 MCTS1Q9ULC4 181 aaKnown RBP10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 HDGFL3Q9Y3E1 203 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 SNX13Q9Y5W8 968 aa10.58□□□□□ -0.72
SQSTM1-206ENST00000466342 A0A0B4J2E0 115 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 A0A1B0GX12 115 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 A0A1W2PNR3 127 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 ELOA3DA6NLF2 546 aaPredicted RBP10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 ARPC2O15144 300 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 GYG2O15488 501 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 TMCC2O75069 709 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 SMNDC1O75940 238 aaKnown RBP eCLIP10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 SYNGR4O95473 234 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 ZNF682O95780 498 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 CGAP01215 116 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 CD8BP10966 210 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 PNMTP11086 282 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 TNFRSF1BP20333 461 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 MSX2P35548 267 aaPredicted RBP10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 CD79BP40259 229 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 OR1E2P47887 323 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 ATP5J2P56134 94 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 CARD18P57730 90 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 RAC3P60763 192 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 CBX1P83916 185 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 ZNF239Q16600 458 aaKnown RBP10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 CLEC12BQ2HXU8 276 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 ELOA3BQ3SY89 546 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 ENTPD8Q5MY95 495 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 SWT1Q5T5J6 900 aaKnown RBP10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 VWA1Q6PCB0 445 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 TMPPEQ6ZT21 453 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 FAM214BQ7L5A3 538 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 VTCN1Q7Z7D3 282 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 ELOA3Q8NG57 546 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 ADAMTS16Q8TE57 1224 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 SLC38A4Q969I6 547 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 SLC7A6OSQ96CW6 309 aaPredicted RBP10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 SLC47A1Q96FL8 570 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 WFIKKN1Q96NZ8 548 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 SRXN1Q9BYN0 137 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 PRRG4Q9BZD6 226 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 MUC13Q9H3R2 512 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 DCAF13Q9NV06 445 aaKnown RBP10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 ELOVL5Q9NYP7 299 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 SELENONQ9NZV5 590 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 CDC42EP3Q9UKI2 254 aa10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 SAMD4AQ9UPU9 718 aaKnown RBP10.57□□□□□ -0.72
SQSTM1-206ENST00000466342 ROS1P08922 2347 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 ZC3H12DA2A288 527 aaKnown RBP10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 TRAPPC13A5PLN9 417 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 CPSF4LA6NMK7 179 aaKnown RBP10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 A8MVM7 634 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms