RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 SLC38A2Q96QD8 506 aa17.92■□□□□ 0.46
COL6A1-203ENST00000466285 SF3B5Q9BWJ5 86 aaKnown RBP17.92■□□□□ 0.46
COL6A1-203ENST00000466285 P2RX2Q9UBL9 471 aa17.92■□□□□ 0.46
COL6A1-203ENST00000466285 CDC42EP3Q9UKI2 254 aa17.92■□□□□ 0.46
COL6A1-203ENST00000466285 RFXANKO14593 260 aa17.91■□□□□ 0.46
COL6A1-203ENST00000466285 F12P00748 615 aaPredicted RBP17.91■□□□□ 0.46
COL6A1-203ENST00000466285 IFNA2P01563 188 aa17.91■□□□□ 0.46
COL6A1-203ENST00000466285 CECR9P0C854 216 aa17.91■□□□□ 0.46
COL6A1-203ENST00000466285 DSTNP60981 165 aa17.91■□□□□ 0.46
COL6A1-203ENST00000466285 ADIPOQQ15848 244 aa17.91■□□□□ 0.46
COL6A1-203ENST00000466285 RNF220Q5VTB9 566 aa17.91■□□□□ 0.46
COL6A1-203ENST00000466285 WBP2NLQ6ICG8 309 aa17.91■□□□□ 0.46
COL6A1-203ENST00000466285 NIPAL3Q6P499 406 aa17.91■□□□□ 0.46
COL6A1-203ENST00000466285 VHLLQ6RSH7 139 aa17.91■□□□□ 0.46
COL6A1-203ENST00000466285 SPATA19Q7Z5L4 167 aa17.91■□□□□ 0.46
COL6A1-203ENST00000466285 WDFY1Q8IWB7 410 aa17.91■□□□□ 0.46
COL6A1-203ENST00000466285 PEX5LQ8IYB4 626 aa17.91■□□□□ 0.46
COL6A1-203ENST00000466285 C10orf111Q8N326 155 aa17.91■□□□□ 0.46
COL6A1-203ENST00000466285 MGARPQ8TDB4 240 aa17.91■□□□□ 0.46
COL6A1-203ENST00000466285 MAL2Q969L2 176 aa17.91■□□□□ 0.46
COL6A1-203ENST00000466285 MSI2Q96DH6 328 aaKnown RBP17.91■□□□□ 0.46
COL6A1-203ENST00000466285 ZNF837Q96EG3 531 aaPredicted RBP17.91■□□□□ 0.46
COL6A1-203ENST00000466285 OR52B2Q96RD2 323 aa17.91■□□□□ 0.46
COL6A1-203ENST00000466285 PARD6BQ9BYG5 372 aa17.91■□□□□ 0.46
COL6A1-203ENST00000466285 CA10Q9NS85 328 aa17.91■□□□□ 0.46
COL6A1-203ENST00000466285 B3GAT1Q9P2W7 334 aa17.91■□□□□ 0.46
COL6A1-203ENST00000466285 SEC14L2O76054 403 aa17.9■□□□□ 0.46
COL6A1-203ENST00000466285 IGFBP1P08833 259 aaPredicted RBP17.9■□□□□ 0.46
COL6A1-203ENST00000466285 PNMTP11086 282 aa17.9■□□□□ 0.46
COL6A1-203ENST00000466285 HOXB9P17482 250 aaPredicted RBP17.9■□□□□ 0.46
COL6A1-203ENST00000466285 CRATP43155 626 aa17.9■□□□□ 0.46
COL6A1-203ENST00000466285 NR4A2P43354 598 aa17.9■□□□□ 0.46
COL6A1-203ENST00000466285 LSM11P83369 360 aaKnown RBP eCLIP17.9■□□□□ 0.46
COL6A1-203ENST00000466285 TGFBR3Q03167 851 aa17.9■□□□□ 0.46
COL6A1-203ENST00000466285 CARTPTQ16568 116 aa17.9■□□□□ 0.46
COL6A1-203ENST00000466285 PRAMEF8Q5VWM4 474 aa17.9■□□□□ 0.46
COL6A1-203ENST00000466285 PRAMEF7Q5VXH5 474 aa17.9■□□□□ 0.46
COL6A1-203ENST00000466285 ATG16L1Q676U5 607 aa17.9■□□□□ 0.46
COL6A1-203ENST00000466285 CYB5R2Q6BCY4 276 aa17.9■□□□□ 0.46
COL6A1-203ENST00000466285 KLHL24Q6TFL4 600 aa17.9■□□□□ 0.46
COL6A1-203ENST00000466285 POMGNT2Q8NAT1 580 aa17.9■□□□□ 0.46
COL6A1-203ENST00000466285 PROX1Q92786 737 aa17.9■□□□□ 0.46
COL6A1-203ENST00000466285 KTI12Q96EK9 354 aaPredicted RBP17.9■□□□□ 0.46
COL6A1-203ENST00000466285 BOD1Q96IK1 185 aa17.9■□□□□ 0.46
COL6A1-203ENST00000466285 A8MVM7 634 aa17.89■□□□□ 0.45
COL6A1-203ENST00000466285 HDAC3O15379 428 aa17.89■□□□□ 0.45
COL6A1-203ENST00000466285 NAAAQ02083 359 aa17.89■□□□□ 0.45
COL6A1-203ENST00000466285 HGFACQ04756 655 aa17.89■□□□□ 0.45
COL6A1-203ENST00000466285 CHRNB3Q05901 458 aa17.89■□□□□ 0.45
COL6A1-203ENST00000466285 GSTA3Q16772 222 aa17.89■□□□□ 0.45
COL6A1-203ENST00000466285 PDCD4Q53EL6 469 aaKnown RBP17.89■□□□□ 0.45
COL6A1-203ENST00000466285 ZNF440Q8IYI8 595 aa17.89■□□□□ 0.45
COL6A1-203ENST00000466285 ZCCHC24Q8N2G6 241 aaKnown RBP17.89■□□□□ 0.45
COL6A1-203ENST00000466285 TMEM158Q8WZ71 300 aa17.89■□□□□ 0.45
COL6A1-203ENST00000466285 MAELQ96JY0 434 aaKnown RBP17.89■□□□□ 0.45
COL6A1-203ENST00000466285 FOXN4Q96NZ1 517 aa17.89■□□□□ 0.45
COL6A1-203ENST00000466285 BEX2Q9BXY8 128 aa17.89■□□□□ 0.45
COL6A1-203ENST00000466285 TPT1P8Q9HAU6 139 aa17.89■□□□□ 0.45
COL6A1-203ENST00000466285 TMEM160Q9NX00 188 aa17.89■□□□□ 0.45
COL6A1-203ENST00000466285 CRNNQ9UBG3 495 aaPredicted RBP17.89■□□□□ 0.45
COL6A1-203ENST00000466285 IGKV1D-42A0A075B6H8 117 aa17.88■□□□□ 0.45
COL6A1-203ENST00000466285 TMEM120BA0PK00 339 aa17.88■□□□□ 0.45
COL6A1-203ENST00000466285 ZNF587BE7ETH6 402 aa17.88■□□□□ 0.45
COL6A1-203ENST00000466285 LMX1BO60663 402 aa17.88■□□□□ 0.45
COL6A1-203ENST00000466285 WNT11O96014 354 aa17.88■□□□□ 0.45
COL6A1-203ENST00000466285 IGLV1-44P01699 117 aa17.88■□□□□ 0.45
COL6A1-203ENST00000466285 CSF3P09919 207 aa17.88■□□□□ 0.45
COL6A1-203ENST00000466285 OR4A8P0C604 315 aa17.88■□□□□ 0.45
COL6A1-203ENST00000466285 UQCRBP14927 111 aa17.88■□□□□ 0.45
COL6A1-203ENST00000466285 HTR2AP28223 471 aa17.88■□□□□ 0.45
COL6A1-203ENST00000466285 IL2RGP31785 369 aa17.88■□□□□ 0.45
COL6A1-203ENST00000466285 RPS5P46782 204 aaKnown RBP17.88■□□□□ 0.45
COL6A1-203ENST00000466285 PDLIM4P50479 330 aa17.88■□□□□ 0.45
COL6A1-203ENST00000466285 ROR2Q01974 943 aaKnown RBP17.88■□□□□ 0.45
COL6A1-203ENST00000466285 GNA13Q14344 377 aa17.88■□□□□ 0.45
COL6A1-203ENST00000466285 PHYHD1Q5SRE7 291 aa17.88■□□□□ 0.45
COL6A1-203ENST00000466285 NXNQ6DKJ4 435 aa17.88■□□□□ 0.45
COL6A1-203ENST00000466285 TMEM225Q6GV28 225 aa17.88■□□□□ 0.45
COL6A1-203ENST00000466285 SLC25A36Q96CQ1 311 aa17.88■□□□□ 0.45
COL6A1-203ENST00000466285 ZBTB18Q99592 522 aa17.88■□□□□ 0.45
COL6A1-203ENST00000466285 VRK1Q99986 396 aaPredicted RBP17.88■□□□□ 0.45
COL6A1-203ENST00000466285 TAPBPLQ9BX59 468 aa17.88■□□□□ 0.45
COL6A1-203ENST00000466285 BPESC1Q9GZL8 116 aa17.88■□□□□ 0.45
COL6A1-203ENST00000466285 NOX3Q9HBY0 568 aa17.88■□□□□ 0.45
COL6A1-203ENST00000466285 PMF1-BGLAPU3KQ54 211 aa17.88■□□□□ 0.45
COL6A1-203ENST00000466285 ARPC4-TTLL3A0A0A6YYG9 625 aa17.87■□□□□ 0.45
COL6A1-203ENST00000466285 LRP5LA4QPB2 252 aa17.87■□□□□ 0.45
COL6A1-203ENST00000466285 SLC22A3O75751 556 aa17.87■□□□□ 0.45
COL6A1-203ENST00000466285 ZNF432O94892 652 aa17.87■□□□□ 0.45
COL6A1-203ENST00000466285 SNUPNO95149 360 aaKnown RBP17.87■□□□□ 0.45
COL6A1-203ENST00000466285 KRT75O95678 551 aa17.87■□□□□ 0.45
COL6A1-203ENST00000466285 NCF2P19878 526 aaPredicted RBP17.87■□□□□ 0.45
COL6A1-203ENST00000466285 ANXA11P50995 505 aaKnown RBP17.87■□□□□ 0.45
COL6A1-203ENST00000466285 MAP2K6P52564 334 aa17.87■□□□□ 0.45
COL6A1-203ENST00000466285 CRISP3P54108 245 aa17.87■□□□□ 0.45
COL6A1-203ENST00000466285 CLDN17P56750 224 aa17.87■□□□□ 0.45
COL6A1-203ENST00000466285 SNRPD2P62316 118 aaKnown RBP17.87■□□□□ 0.45
COL6A1-203ENST00000466285 MSMPQ1L6U9 139 aa17.87■□□□□ 0.45
COL6A1-203ENST00000466285 FAM120AOSQ5T036 256 aa17.87■□□□□ 0.45
COL6A1-203ENST00000466285 ANKRD16Q6P6B7 361 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms