RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 SSX4O60224 188 aa12.57□□□□□ -0.4
SNRNP40-203ENST00000463988 FZD7O75084 574 aa12.57□□□□□ -0.4
SNRNP40-203ENST00000463988 BMP4P12644 408 aa12.57□□□□□ -0.4
SNRNP40-203ENST00000463988 ETS2P15036 469 aa12.57□□□□□ -0.4
SNRNP40-203ENST00000463988 HOXB9P17482 250 aaPredicted RBP12.57□□□□□ -0.4
SNRNP40-203ENST00000463988 PTNP21246 168 aa12.57□□□□□ -0.4
SNRNP40-203ENST00000463988 NUDT6P53370 316 aa12.57□□□□□ -0.4
SNRNP40-203ENST00000463988 SLC25A3Q00325 362 aa12.57□□□□□ -0.4
SNRNP40-203ENST00000463988 RAB35Q15286 201 aa12.57□□□□□ -0.4
SNRNP40-203ENST00000463988 RPS26P11Q5JNZ5 115 aaPredicted RBP12.57□□□□□ -0.4
SNRNP40-203ENST00000463988 KLHL24Q6TFL4 600 aa12.57□□□□□ -0.4
SNRNP40-203ENST00000463988 CREB3L2Q70SY1 520 aa12.57□□□□□ -0.4
SNRNP40-203ENST00000463988 SERPINA11Q86U17 422 aa12.57□□□□□ -0.4
SNRNP40-203ENST00000463988 C1QTNF6Q9BXI9 259 aa12.57□□□□□ -0.4
SNRNP40-203ENST00000463988 C12orf10Q9HB07 376 aa12.57□□□□□ -0.4
SNRNP40-203ENST00000463988 TMEM45AQ9NWC5 275 aa12.57□□□□□ -0.4
SNRNP40-203ENST00000463988 ADPRHL2Q9NX46 363 aa12.57□□□□□ -0.4
SNRNP40-203ENST00000463988 GMEB1Q9Y692 573 aa12.57□□□□□ -0.4
SNRNP40-203ENST00000463988 CHD3Q12873 2000 aaKnown RBP12.56□□□□□ -0.4
SNRNP40-203ENST00000463988 FTCDNL1E5RQL4 147 aa12.56□□□□□ -0.4
SNRNP40-203ENST00000463988 ZNF587BE7ETH6 402 aa12.56□□□□□ -0.4
SNRNP40-203ENST00000463988 KRT33AO76009 404 aa12.56□□□□□ -0.4
SNRNP40-203ENST00000463988 AHSA1O95433 338 aa12.56□□□□□ -0.4
SNRNP40-203ENST00000463988 NUDT7P0C024 238 aa12.56□□□□□ -0.4
SNRNP40-203ENST00000463988 PRKAR1BP31321 381 aa12.56□□□□□ -0.4
SNRNP40-203ENST00000463988 APOBEC3AP31941 199 aaPredicted RBP12.56□□□□□ -0.4
SNRNP40-203ENST00000463988 STX1BP61266 288 aa12.56□□□□□ -0.4
SNRNP40-203ENST00000463988 CHRNB3Q05901 458 aa12.56□□□□□ -0.4
SNRNP40-203ENST00000463988 LRIF1Q5T3J3 769 aa12.56□□□□□ -0.4
SNRNP40-203ENST00000463988 AGBL2Q5U5Z8 902 aa12.56□□□□□ -0.4
SNRNP40-203ENST00000463988 SLC2A7Q6PXP3 512 aa12.56□□□□□ -0.4
SNRNP40-203ENST00000463988 BLOC1S3Q6QNY0 202 aa12.56□□□□□ -0.4
SNRNP40-203ENST00000463988 CLEC2AQ6UVW9 174 aa12.56□□□□□ -0.4
SNRNP40-203ENST00000463988 C5orf46Q6UWT4 87 aa12.56□□□□□ -0.4
SNRNP40-203ENST00000463988 C6orf89Q6UWU4 347 aa12.56□□□□□ -0.4
SNRNP40-203ENST00000463988 EPHX4Q8IUS5 362 aa12.56□□□□□ -0.4
SNRNP40-203ENST00000463988 GOLGA6L1Q8N7Z2 621 aa12.56□□□□□ -0.4
SNRNP40-203ENST00000463988 ANKK1Q8NFD2 765 aa12.56□□□□□ -0.4
SNRNP40-203ENST00000463988 LINC00470Q9BZP3 86 aa12.56□□□□□ -0.4
SNRNP40-203ENST00000463988 MOV10Q9HCE1 1003 aaKnown RBP12.56□□□□□ -0.4
SNRNP40-203ENST00000463988 TCF7L2Q9NQB0 619 aa12.56□□□□□ -0.4
SNRNP40-203ENST00000463988 ADAM21Q9UKJ8 722 aa12.56□□□□□ -0.4
SNRNP40-203ENST00000463988 ATP23Q9Y6H3 246 aa12.56□□□□□ -0.4
SNRNP40-203ENST00000463988 A0A096LNT2 108 aa12.55□□□□□ -0.4
SNRNP40-203ENST00000463988 ELOA3DA6NLF2 546 aaPredicted RBP12.55□□□□□ -0.4
SNRNP40-203ENST00000463988 C5orf58C9J3I9 102 aa12.55□□□□□ -0.4
SNRNP40-203ENST00000463988 POLR3GO15318 223 aaPredicted RBP12.55□□□□□ -0.4
SNRNP40-203ENST00000463988 OR2T1O43869 369 aa12.55□□□□□ -0.4
SNRNP40-203ENST00000463988 HOXB1P14653 301 aaPredicted RBP12.55□□□□□ -0.4
SNRNP40-203ENST00000463988 PPIBP23284 216 aaKnown RBP12.55□□□□□ -0.4
SNRNP40-203ENST00000463988 EGR4Q05215 589 aa12.55□□□□□ -0.4
SNRNP40-203ENST00000463988 C3orf36Q3SXR2 165 aa12.55□□□□□ -0.4
SNRNP40-203ENST00000463988 ELOA3BQ3SY89 546 aa12.55□□□□□ -0.4
SNRNP40-203ENST00000463988 HIKESHIQ53FT3 197 aa12.55□□□□□ -0.4
SNRNP40-203ENST00000463988 LSMEM1Q8N8F7 131 aa12.55□□□□□ -0.4
SNRNP40-203ENST00000463988 ELOA3Q8NG57 546 aa12.55□□□□□ -0.4
SNRNP40-203ENST00000463988 OR1K1Q8NGR3 316 aa12.55□□□□□ -0.4
SNRNP40-203ENST00000463988 MAGEE2Q8TD90 523 aaPredicted RBP12.55□□□□□ -0.4
SNRNP40-203ENST00000463988 MAL2Q969L2 176 aa12.55□□□□□ -0.4
SNRNP40-203ENST00000463988 CCDC28BQ9BUN5 200 aa12.55□□□□□ -0.4
SNRNP40-203ENST00000463988 PTDSS2Q9BVG9 487 aa12.55□□□□□ -0.4
SNRNP40-203ENST00000463988 SLC25A37Q9NYZ2 338 aa12.55□□□□□ -0.4
SNRNP40-203ENST00000463988 RCE1Q9Y256 329 aa12.55□□□□□ -0.4
SNRNP40-203ENST00000463988 PMF1-BGLAPU3KQ54 211 aa12.55□□□□□ -0.4
SNRNP40-203ENST00000463988 ANK3Q12955 4377 aaKnown RBP12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 IGHV4-30-2A0A087WSY4 118 aa12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 ARPC4-TTLL3A0A0A6YYG9 625 aa12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 LOC102725191A0A1B0GVB3 256 aa12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 ZNF432O94892 652 aa12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 CSF3P09919 207 aa12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 ARAFP10398 606 aa12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 PNMTP11086 282 aa12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 SLC25A16P16260 332 aa12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 CDH2P19022 906 aaPredicted RBP12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 SELENOPP49908 381 aa12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 IDH3AP50213 366 aa12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 EFNA4P52798 201 aa12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 SH3BGRP55822 239 aaPredicted RBP12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 LOXL1Q08397 574 aaPredicted RBP12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 TBRG1Q3YBR2 411 aa12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 GCNT6Q5T4J0 391 aa12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 REEP3Q6NUK4 255 aa12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 NIPAL3Q6P499 406 aa12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 DHRS4L2Q6PKH6 230 aa12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 NET1Q7Z628 596 aaPredicted RBP12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 LSRQ86X29 649 aaPredicted RBP12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 KRT73Q86Y46 540 aa12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 FUNDC1Q8IVP5 155 aa12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 MSRB3Q8IXL7 192 aa12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 FAM169BQ8N8A8 192 aa12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 DNAJA4Q8WW22 397 aaPredicted RBP12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 BCL2L2Q92843 193 aaPredicted RBP12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 SPDL1Q96EA4 605 aa12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 KTI12Q96EK9 354 aaPredicted RBP12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 SLC38A2Q96QD8 506 aa12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 MDFIQ99750 246 aa12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 KATNB1Q9BVA0 655 aa12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 SPATA5L1Q9BVQ7 753 aa12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 SLC52A3Q9NQ40 469 aa12.54□□□□□ -0.4
SNRNP40-203ENST00000463988 CRNNQ9UBG3 495 aaPredicted RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms