RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 C3orf30Q96M34 536 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 MECRQ9BV79 373 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 ROPN1BQ9BZX4 212 aaPredicted RBP6.44□□□□□ -1.38
USP54-208ENST00000461520 TMEM185BQ9H7F4 350 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 CXorf36Q9H7Y0 433 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 ROPN1Q9HAT0 212 aaPredicted RBP6.44□□□□□ -1.38
USP54-208ENST00000461520 SLC17A7Q9P2U7 560 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 LGALS13Q9UHV8 139 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 ZDHHC2Q9UIJ5 367 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 ICAM5Q9UMF0 924 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 CLEC4AQ9UMR7 237 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 FAF1Q9UNN5 650 aaPredicted RBP6.44□□□□□ -1.38
USP54-208ENST00000461520 DTNAQ9Y4J8 743 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 SNX8Q9Y5X2 465 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 CSPG4Q6UVK1 2322 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.43□□□□□ -1.38
USP54-208ENST00000461520 DUXAA6NLW8 204 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 NPIPB9F8W1W9 429 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 GTPBP1O00178 669 aaKnown RBP6.43□□□□□ -1.38
USP54-208ENST00000461520 ZNF195O14628 629 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 EIF4E2O60573 245 aaKnown RBP6.43□□□□□ -1.38
USP54-208ENST00000461520 SPAG7O75391 227 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 SKAP2O75563 359 aaPredicted RBP6.43□□□□□ -1.38
USP54-208ENST00000461520 NUDT14O95848 222 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 C6orf47O95873 294 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 AK1P00568 194 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 HEXAP06865 529 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 PAX1P15863 534 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 PSMB1P20618 241 aaKnown RBP6.43□□□□□ -1.38
USP54-208ENST00000461520 AGTR1P30556 359 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 SFTPDP35247 375 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 ATP12AP54707 1039 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 IFFO1Q0D2I5 559 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 FOXF1Q12946 379 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 ZNF239Q16600 458 aaKnown RBP6.43□□□□□ -1.38
USP54-208ENST00000461520 SMU1Q2TAY7 513 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 DDX59Q5T1V6 619 aaKnown RBP eCLIP6.43□□□□□ -1.38
USP54-208ENST00000461520 IL23RQ5VWK5 629 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 CBLN3Q6UW01 205 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 ZCCHC23Q6ZST2 131 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 PLEKHM3Q6ZWE6 761 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 YTHDF3Q7Z739 585 aaKnown RBP6.43□□□□□ -1.38
USP54-208ENST00000461520 GLCCI1Q86VQ1 547 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 RIMKLAQ8IXN7 391 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 STEAP2Q8NFT2 490 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 AGR3Q8TD06 166 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 GPR119Q8TDV5 335 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 TMEM171Q8WVE6 324 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 IGFBPL1Q8WX77 278 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 ROBO4Q8WZ75 1007 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 TUBGCP3Q96CW5 907 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 ARSGQ96EG1 525 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 ZIM3Q96PE6 472 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 KLHDC3Q9BQ90 382 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 C1orf50Q9BV19 199 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 HDHD5Q9BXW7 423 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 ACTR6Q9GZN1 396 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 ANKZF1Q9H8Y5 726 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 KLHL13Q9P2N7 655 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 RNF7Q9UBF6 113 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 GIMAP2Q9UG22 337 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 CARD8Q9Y2G2 431 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 KCNE3Q9Y6H6 103 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 COL6A5A8TX70 2615 aa6.43□□□□□ -1.38
USP54-208ENST00000461520 NPIPA5A0A0B4J1W7 369 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 NPIPA7E9PJI5 369 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 CFLARO15519 480 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 ZNF264O43296 627 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 TYROBPO43914 113 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 EFNA2O43921 213 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 STX11O75558 287 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 GCM2O75603 506 aaPredicted RBP6.42□□□□□ -1.38
USP54-208ENST00000461520 NTN1O95631 604 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 BPGMP07738 259 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 YES1P07947 543 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 NPIPA8P0DM63 369 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 G6PDP11413 515 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 UBL4AP11441 157 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 MATN1P21941 496 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 PCSK6P29122 969 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 SHC1P29353 583 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 ARRB2P32121 409 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 CLDN8P56748 225 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 VSNL1P62760 191 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 HBA1P69905 142 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 EMX2Q04743 252 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 SELENBP1Q13228 472 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 CBFBQ13951 182 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 TMEM176BQ3YBM2 270 aaPredicted RBP6.42□□□□□ -1.38
USP54-208ENST00000461520 SLC25A53Q5H9E4 307 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 ADAM5Q6NVV9 412 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 EMBQ6PCB8 327 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 TFAP2EQ6VUC0 442 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 ZNF704Q6ZNC4 412 aaPredicted RBP6.42□□□□□ -1.38
USP54-208ENST00000461520 FCRLAQ7L513 359 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 TUSC5Q8IXB3 177 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 GABRG1Q8N1C3 465 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 SLC43A2Q8N370 569 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 PRR18Q8N4B5 295 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 KRTCAP2Q8N6L1 136 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms