RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 CCR9P51686 369 aa7.24□□□□□ -1.25
NEDD9-204ENST00000448183 BTG1P62324 171 aa7.24□□□□□ -1.25
NEDD9-204ENST00000448183 GPR176Q14439 515 aa7.24□□□□□ -1.25
NEDD9-204ENST00000448183 LTB4RQ15722 352 aa7.24□□□□□ -1.25
NEDD9-204ENST00000448183 TMEM41BQ5BJD5 291 aa7.24□□□□□ -1.25
NEDD9-204ENST00000448183 SOHLH1Q5JUK2 328 aa7.24□□□□□ -1.25
NEDD9-204ENST00000448183 KDM4DQ6B0I6 523 aa7.24□□□□□ -1.25
NEDD9-204ENST00000448183 STEAP1BQ6NZ63 245 aa7.24□□□□□ -1.25
NEDD9-204ENST00000448183 PAPD4Q6PIY7 484 aaKnown RBP7.24□□□□□ -1.25
NEDD9-204ENST00000448183 SLC30A7Q8NEW0 376 aa7.24□□□□□ -1.25
NEDD9-204ENST00000448183 OR9K2Q8NGE7 335 aa7.24□□□□□ -1.25
NEDD9-204ENST00000448183 LINC01599Q8WXQ3 324 aa7.24□□□□□ -1.25
NEDD9-204ENST00000448183 FOXN4Q96NZ1 517 aa7.24□□□□□ -1.25
NEDD9-204ENST00000448183 PKMYT1Q99640 499 aa7.24□□□□□ -1.25
NEDD9-204ENST00000448183 NIPSNAP1Q9BPW8 284 aa7.24□□□□□ -1.25
NEDD9-204ENST00000448183 LIN7BQ9HAP6 207 aa7.24□□□□□ -1.25
NEDD9-204ENST00000448183 C1orf123Q9NWV4 160 aa7.24□□□□□ -1.25
NEDD9-204ENST00000448183 SRPK3Q9UPE1 567 aa7.24□□□□□ -1.25
NEDD9-204ENST00000448183 TRABD2BA6NFA1 517 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 SOCS6O14544 535 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 GALR3O60755 368 aaPredicted RBP7.23□□□□□ -1.25
NEDD9-204ENST00000448183 CLEC2LP0C7M8 214 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 BMP1P13497 986 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 ZNF28P17035 718 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 CNR1P21554 472 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 HOXD9P28356 352 aaPredicted RBP7.23□□□□□ -1.25
NEDD9-204ENST00000448183 VASPP50552 380 aaPredicted RBP7.23□□□□□ -1.25
NEDD9-204ENST00000448183 DCAF7P61962 342 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 MFGE8Q08431 387 aaPredicted RBP7.23□□□□□ -1.25
NEDD9-204ENST00000448183 CRMP1Q14194 572 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 C11orf91Q3C1V1 193 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 YIF1BQ5BJH7 314 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 ABHD17BQ5VST6 288 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 SLCO4C1Q6ZQN7 724 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 AMIGO3Q86WK7 504 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 KDM8Q8N371 416 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 PLPP5Q8NEB5 264 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 OR52I1Q8NGK6 324 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 OR13C9Q8NGT0 318 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 UPRTQ96BW1 309 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 TNFRSF13CQ96RJ3 184 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 GSX2Q9BZM3 304 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 METTL9Q9H1A3 318 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 STARD5Q9NSY2 213 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 ETV7Q9Y603 341 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 CEBPZOSA8MTT3 80 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 MPPED1O15442 326 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 LILRB3O75022 631 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 MAKP20794 623 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 MSR1P21757 451 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 OXA1LQ15070 435 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 PDLIM3Q53GG5 364 aaPredicted RBP7.23□□□□□ -1.25
NEDD9-204ENST00000448183 CMIPQ8IY22 773 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 RAB3CQ96E17 227 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 NEURL3Q96EH8 262 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 LRRC46Q96FV0 321 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 IL23AQ9NPF7 189 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 ARFGEF2Q9Y6D5 1785 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 PRAMEF26H0Y7S4 382 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 ZNF264O43296 627 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 SULT1B1O43704 296 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 C1SP09871 688 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 NME2P22392 152 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 ISL1P61371 349 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 TAGLNQ01995 201 aaKnown RBP7.23□□□□□ -1.25
NEDD9-204ENST00000448183 SF3B4Q15427 424 aaKnown RBP eCLIP7.23□□□□□ -1.25
NEDD9-204ENST00000448183 PLCXD3Q63HM9 321 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 Q6ZSR6 202 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 PAQR9Q6ZVX9 377 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 KIAA0907Q7Z7F0 614 aaPredicted RBP7.23□□□□□ -1.25
NEDD9-204ENST00000448183 TMEM200AQ86VY9 491 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 EID2Q8N6I1 236 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 KCNG3Q8TAE7 436 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 FAM213BQ8TBF2 198 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 SLC25A21Q9BQT8 299 aaPredicted RBP7.23□□□□□ -1.25
NEDD9-204ENST00000448183 TMEM38AQ9H6F2 299 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 CXorf36Q9H7Y0 433 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 DNAJB11Q9UBS4 358 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 CA5BQ9Y2D0 317 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 A6NCN8 305 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 GFRA2O00451 464 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 ZNF593O00488 134 aaPredicted RBP7.23□□□□□ -1.25
NEDD9-204ENST00000448183 ZNF780AO75290 641 aaPredicted RBP7.23□□□□□ -1.25
NEDD9-204ENST00000448183 GJB3O75712 270 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 ELK1P19419 428 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 FPR3P25089 353 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 GCH1P30793 250 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 TPMTP51580 245 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 EBPQ15125 230 aaKnown RBP7.23□□□□□ -1.25
NEDD9-204ENST00000448183 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.23□□□□□ -1.251e-6■■■■□ 24
NEDD9-204ENST00000448183 OR5K2Q8NHB8 316 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 SLC41A2Q96JW4 573 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 BTF3L4Q96K17 158 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 NECTIN4Q96NY8 510 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 ZIC5Q96T25 663 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 VN1R3Q9BXE9 311 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 TPSD1Q9BZJ3 242 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 ULBP2Q9BZM5 246 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 MCOLN1Q9GZU1 580 aa7.23□□□□□ -1.25
NEDD9-204ENST00000448183 C1orf198Q9H425 327 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms