RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 TIMM23BQ5SRD1 257 aa13.41□□□□□ -0.26
LIMS3-201ENST00000437679 SWT1Q5T5J6 900 aaKnown RBP13.41□□□□□ -0.26
LIMS3-201ENST00000437679 ZNF613Q6PF04 617 aa13.41□□□□□ -0.26
LIMS3-201ENST00000437679 SPNS3Q6ZMD2 512 aa13.41□□□□□ -0.26
LIMS3-201ENST00000437679 ARPINQ7Z6K5 226 aa13.41□□□□□ -0.26
LIMS3-201ENST00000437679 P2RY8Q86VZ1 359 aa13.41□□□□□ -0.26
LIMS3-201ENST00000437679 ZNF433Q8N7K0 673 aaPredicted RBP13.41□□□□□ -0.26
LIMS3-201ENST00000437679 OR6T1Q8NGN1 323 aa13.41□□□□□ -0.26
LIMS3-201ENST00000437679 VANGL1Q8TAA9 524 aaPredicted RBP13.41□□□□□ -0.26
LIMS3-201ENST00000437679 TAAR8Q969N4 342 aa13.41□□□□□ -0.26
LIMS3-201ENST00000437679 MUCL1Q96DR8 90 aa13.41□□□□□ -0.26
LIMS3-201ENST00000437679 ZNF583Q96ND8 569 aa13.41□□□□□ -0.26
LIMS3-201ENST00000437679 ZNF385AQ96PM9 386 aaKnown RBP13.41□□□□□ -0.26
LIMS3-201ENST00000437679 FAM107BQ9H098 131 aa13.41□□□□□ -0.26
LIMS3-201ENST00000437679 TAS2R16Q9NYV7 291 aa13.41□□□□□ -0.26
LIMS3-201ENST00000437679 MALT1Q9UDY8 824 aa13.41□□□□□ -0.26
LIMS3-201ENST00000437679 PRRC2AP48634 2157 aaKnown RBP13.41□□□□□ -0.26
LIMS3-201ENST00000437679 IGKV1D-42A0A075B6H8 117 aa13.4□□□□□ -0.26
LIMS3-201ENST00000437679 FAM220BPB1ANY3 271 aa13.4□□□□□ -0.26
LIMS3-201ENST00000437679 AIM2O14862 343 aa13.4□□□□□ -0.26
LIMS3-201ENST00000437679 RAD51DO75771 328 aa13.4□□□□□ -0.26
LIMS3-201ENST00000437679 MFSD13AQ14CX5 517 aa13.4□□□□□ -0.26
LIMS3-201ENST00000437679 PPA1Q15181 289 aa13.4□□□□□ -0.26
LIMS3-201ENST00000437679 ACKR1Q16570 336 aa13.4□□□□□ -0.26
LIMS3-201ENST00000437679 DEFB113Q30KQ7 82 aa13.4□□□□□ -0.26
LIMS3-201ENST00000437679 ENTPD8Q5MY95 495 aa13.4□□□□□ -0.26
LIMS3-201ENST00000437679 ZNF704Q6ZNC4 412 aaPredicted RBP13.4□□□□□ -0.26
LIMS3-201ENST00000437679 CREB3L2Q70SY1 520 aa13.4□□□□□ -0.26
LIMS3-201ENST00000437679 CPLX4Q7Z7G2 160 aa13.4□□□□□ -0.26
LIMS3-201ENST00000437679 P3H2Q8IVL5 708 aa13.4□□□□□ -0.26
LIMS3-201ENST00000437679 ZIC4Q8N9L1 334 aa13.4□□□□□ -0.26
LIMS3-201ENST00000437679 POMGNT2Q8NAT1 580 aa13.4□□□□□ -0.26
LIMS3-201ENST00000437679 OR2T12Q8NG77 320 aa13.4□□□□□ -0.26
LIMS3-201ENST00000437679 PROX1Q92786 737 aa13.4□□□□□ -0.26
LIMS3-201ENST00000437679 ALPK1Q96QP1 1244 aa13.4□□□□□ -0.26
LIMS3-201ENST00000437679 SLCO5A1Q9H2Y9 848 aa13.4□□□□□ -0.26
LIMS3-201ENST00000437679 ESRP2Q9H6T0 727 aaKnown RBP13.4□□□□□ -0.26
LIMS3-201ENST00000437679 EFCAB1Q9HAE3 211 aa13.4□□□□□ -0.26
LIMS3-201ENST00000437679 BAG5Q9UL15 447 aa13.4□□□□□ -0.26
LIMS3-201ENST00000437679 B3GALT5Q9Y2C3 310 aa13.4□□□□□ -0.26
LIMS3-201ENST00000437679 DSCAMO60469 2012 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 CADP27708 2225 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 OR5H1A6NKK0 313 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 CPSF4LA6NMK7 179 aaKnown RBP13.39□□□□□ -0.27
LIMS3-201ENST00000437679 M0R082 166 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 CHP2O43745 196 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 FZD7O75084 574 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 KRT33AO76009 404 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 ZNF43P17038 809 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 CD53P19397 219 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 GRPRP30550 384 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 LSP1P33241 339 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 IL1RL1Q01638 556 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 TGFBR3Q03167 851 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 C1DQ13901 141 aaKnown RBP13.39□□□□□ -0.27
LIMS3-201ENST00000437679 NPTX1Q15818 432 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 TSPO2Q5TGU0 170 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 OR7E24Q6IFN5 339 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 C20orf204Q6ZNR8 217 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 H1FNTQ75WM6 255 aaPredicted RBP13.39□□□□□ -0.27
LIMS3-201ENST00000437679 ABHD12BQ7Z5M8 362 aaPredicted RBP13.39□□□□□ -0.27
LIMS3-201ENST00000437679 RBM45Q8IUH3 476 aaKnown RBP13.39□□□□□ -0.27
LIMS3-201ENST00000437679 C10orf53Q8N6V4 93 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 OR4D11Q8NGI4 311 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 OR6S1Q8NH40 331 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 ZNF417Q8TAU3 575 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 OXGR1Q96P68 337 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 ZNF587Q96SQ5 575 aaPredicted RBP13.39□□□□□ -0.27
LIMS3-201ENST00000437679 TMEM43Q9BTV4 400 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 CXXC4Q9H2H0 198 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 SLC7A10Q9NS82 523 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 USP22Q9UPT9 525 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 CORINQ9Y5Q5 1042 aa13.39□□□□□ -0.27
LIMS3-201ENST00000437679 TEP1Q99973 2627 aaKnown RBP13.39□□□□□ -0.27
LIMS3-201ENST00000437679 ARID1AO14497 2285 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 ELOVL7A1L3X0 281 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 TRAPPC13A5PLN9 417 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 GMNCA6NCL1 334 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 OR6C65A6NJZ3 312 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 SNX3O60493 162 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 CD3EP07766 207 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 ITGA5P08648 1049 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 NQO1P15559 274 aaKnown RBP13.38□□□□□ -0.27
LIMS3-201ENST00000437679 DRD4P21917 467 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 CBLP22681 906 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 CRYBA2P53672 197 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 GNGT1P63211 74 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 LRRC23Q53EV4 343 aaPredicted RBP13.38□□□□□ -0.27
LIMS3-201ENST00000437679 NCMAPQ5T1S8 102 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 C9orf135Q5VTT2 229 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 NIPAL3Q6P499 406 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 CARM1Q86X55 608 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 TREML1Q86YW5 311 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 EPHX4Q8IUS5 362 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 MICU2Q8IYU8 434 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 KDM8Q8N371 416 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 ADAMTS16Q8TE57 1224 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 PIGTQ969N2 578 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 CMTM5Q96DZ9 223 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 MUS81Q96NY9 551 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms