RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 RBM34P42696 430 aaKnown RBP10.9□□□□□ -0.66
PTPRF-208ENST00000437607 HTR3AP46098 478 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 LIMS1P48059 325 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 POLR2HP52434 150 aaKnown RBP10.9□□□□□ -0.66
PTPRF-208ENST00000437607 MERTKQ12866 999 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 DAG1Q14118 895 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 TOMM20Q15388 145 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 MICAQ29983 383 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 PLPPR5Q32ZL2 321 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 TIGD3Q6B0B8 471 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 KRTAP1-3Q8IUG1 177 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 CBR4Q8N4T8 237 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 WFDC11Q8NEX6 87 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 OR4K5Q8NGD3 323 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 OR9Q2Q8NGE9 314 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 SLC7A13Q8TCU3 470 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 GPR119Q8TDV5 335 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 TMEM255BQ8WV15 326 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 ZBTB8AQ96BR9 441 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 NTNG2Q96CW9 530 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 HS6ST2Q96MM7 605 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 TIMP4Q99727 224 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 SMR3AQ99954 134 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 OSBPL10Q9BXB5 764 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 PRDM14Q9GZV8 571 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 PLEKHF2Q9H8W4 249 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 ZNF556Q9HAH1 456 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 C12orf10Q9HB07 376 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 ACER3Q9NUN7 267 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 ZNF629Q9UEG4 869 aaPredicted RBP10.9□□□□□ -0.66
PTPRF-208ENST00000437607 C15orf41Q9Y2V0 281 aa10.9□□□□□ -0.66
PTPRF-208ENST00000437607 SPIN1Q9Y657 262 aaPredicted RBP10.9□□□□□ -0.66
PTPRF-208ENST00000437607 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 SH3PXD2BA1X283 911 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 KPNA4O00629 521 aaPredicted RBP10.89□□□□□ -0.67
PTPRF-208ENST00000437607 SOCS2O14508 198 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 ADAP00813 363 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 HPNP05981 417 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 ANXA8P13928 327 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 PRKCAP17252 672 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 CDH2P19022 906 aaPredicted RBP10.89□□□□□ -0.67
PTPRF-208ENST00000437607 HK1P19367 917 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 TCEA1P23193 301 aaKnown RBP10.89□□□□□ -0.67
PTPRF-208ENST00000437607 IGFBP5P24593 272 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 CXCR1P25024 350 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 DPP4P27487 766 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 TACR3P29371 465 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 ALDH3A2P51648 485 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 AGFG1P52594 562 aaKnown RBP10.89□□□□□ -0.67
PTPRF-208ENST00000437607 DSCR4P56555 118 aaPredicted RBP10.89□□□□□ -0.67
PTPRF-208ENST00000437607 TOMM34Q15785 309 aaPredicted RBP10.89□□□□□ -0.67
PTPRF-208ENST00000437607 RAET1LQ5VY80 246 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 VASNQ6EMK4 673 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 C3orf33Q6P1S2 294 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 PODNL1Q6PEZ8 512 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 TTC33Q6PID6 262 aaPredicted RBP10.89□□□□□ -0.67
PTPRF-208ENST00000437607 IZUMO2Q6UXV1 221 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 TMEM179BQ7Z7N9 219 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 ATG4DQ86TL0 474 aaPredicted RBP10.89□□□□□ -0.67
PTPRF-208ENST00000437607 NKAIN4Q8IVV8 208 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 HS3ST5Q8IZT8 346 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 WDSUB1Q8N9V3 476 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 AQP11Q8NBQ7 271 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 TMEM239Q8WW34 195 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 NRG4Q8WWG1 115 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 DNAJC9Q8WXX5 260 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 MRGPRX4Q96LA9 322 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 KLHDC3Q9BQ90 382 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 PSD2Q9BQI7 771 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 TACO1Q9BSH4 297 aaKnown RBP10.89□□□□□ -0.67
PTPRF-208ENST00000437607 TMEM5Q9Y2B1 443 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 SLC6A5Q9Y345 797 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 MED31Q9Y3C7 131 aa10.89□□□□□ -0.67
PTPRF-208ENST00000437607 RTTNQ86VV8 2226 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 A0A087WUJ7 227 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 A0A087WUU8 490 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 A0A1W2PPR1 153 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 PIP5K1CO60331 668 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 CBR3O75828 277 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 LYPD3O95274 346 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 RAF1P04049 648 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 THY1P04216 161 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 EPXP11678 715 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 ZNF17P17021 662 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 ELK4P28324 431 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 SRD5A2P31213 254 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 EIF1P41567 113 aaKnown RBP10.88□□□□□ -0.67
PTPRF-208ENST00000437607 HSPA13P48723 471 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 HMGA2P52926 109 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 IL1RL1Q01638 556 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 SELENBP1Q13228 472 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 SEC23BQ15437 767 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 DEFB113Q30KQ7 82 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 RFX4Q33E94 735 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 NSUN5P2Q63ZY6 315 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 WDR88Q6ZMY6 472 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 MBOAT2Q6ZWT7 520 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 GALNT4Q8N4A0 578 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 LINC01560Q8TB33 94 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 WDYHV1Q96HA8 205 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms