RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 PLK3Q9H4B4 646 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 AK6Q9Y3D8 172 aaKnown RBP6.72□□□□□ -1.33
VPS53-204ENST00000437048 MPDZO75970 2070 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 TRAV1-2A0A0B4J238 106 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 GABRPO00591 440 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 HNRNPA1P09651 372 aaKnown RBP eCLIP6.72□□□□□ -1.33
VPS53-204ENST00000437048 ADPRHP54922 357 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 DPPA3Q6W0C5 159 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 UEVLDQ8IX04 471 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 OR4N5Q8IXE1 308 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 TMEM239Q8WW34 195 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 MAP3K3Q99759 626 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 RIMBP3CA6NJZ7 1639 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 RIMBP3BA6NNM3 1639 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 RIMBP3Q9UFD9 1639 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 SLC31A2O15432 143 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 DPP4P27487 766 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 TPBGQ13641 420 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 RNF111Q6ZNA4 994 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 CFAP77Q6ZQR2 320 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 OR6C4Q8NGE1 309 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 SLC25A43Q8WUT9 341 aaPredicted RBP6.72□□□□□ -1.33
VPS53-204ENST00000437048 OR2A14Q96R47 310 aa6.72□□□□□ -1.33
VPS53-204ENST00000437048 EP300Q09472 2414 aaPredicted RBP6.72□□□□□ -1.33
VPS53-204ENST00000437048 NPIPB15A6NHN6 443 aaPredicted RBP6.71□□□□□ -1.33
VPS53-204ENST00000437048 PDGFBP01127 241 aaPredicted RBP6.71□□□□□ -1.33
VPS53-204ENST00000437048 WEE1P30291 646 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 PDE7AQ13946 482 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 GALNT10Q86SR1 603 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 ZNF610Q8N9Z0 462 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 KHSRPQ92945 711 aaKnown RBP eCLIP6.71□□□□□ -1.33
VPS53-204ENST00000437048 SDSLQ96GA7 329 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 PCDHGC4Q9Y5F7 938 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 EPHX1P07099 455 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 TAZQ16635 292 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 OR51A4Q8NGJ6 313 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 OR51T1Q8NGJ9 327 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 LKAAEAR1Q8TD35 194 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 ARSGQ96EG1 525 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 TBX5Q99593 518 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 PKIBQ9C010 78 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 C1orf198Q9H425 327 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 EGLN3Q9H6Z9 239 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 GALNT9Q9HCQ5 603 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 OR52A1Q9UKL2 312 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 GPR55Q9Y2T6 319 aaPredicted RBP6.71□□□□□ -1.33
VPS53-204ENST00000437048 GALR3O60755 368 aaPredicted RBP6.71□□□□□ -1.33
VPS53-204ENST00000437048 TNFSF9P41273 254 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 MEOX2P50222 304 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 RAB7AP51149 207 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 PER3P56645 1201 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 GPR85P60893 370 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 FCRL6Q6DN72 434 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 TECPR1Q7Z6L1 1165 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 BAP18Q8IXM2 172 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 ZFPM2Q8WW38 1151 aa6.71□□□□□ -1.33
VPS53-204ENST00000437048 NOL4LQ96MY1 436 aaPredicted RBP6.71□□□□□ -1.33
VPS53-204ENST00000437048 WNK2Q9Y3S1 2297 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 DRD5P21918 477 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 FGF9P31371 208 aaPredicted RBP6.71□□□□□ -1.34
VPS53-204ENST00000437048 PIGAP37287 484 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 GDNFP39905 211 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 CLDN6P56747 220 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 DHODHQ02127 395 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 GPR17Q13304 367 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 SOWAHAQ2M3V2 549 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 ISCA2Q86U28 154 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 LINC00116Q8NCU8 138 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 A8MX80 341 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 USP2O75604 605 aaPredicted RBP6.71□□□□□ -1.34
VPS53-204ENST00000437048 FUCA1P04066 466 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 CBLP22681 906 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 ZNF85Q03923 595 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 EGR3Q06889 387 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 GRM7Q14831 915 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 TARBP2Q15633 366 aaKnown RBP6.71□□□□□ -1.34
VPS53-204ENST00000437048 BATFQ16520 125 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 PRSS42Q7Z5A4 293 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 CPOQ8IVL8 374 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 FAM71CQ8NEG0 241 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 PITX2Q99697 317 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 ZNF426Q9BUY5 554 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 C1QTNF3Q9BXJ4 246 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 CTDSP1Q9GZU7 261 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 BET1LQ9NYM9 111 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 RNF11Q9Y3C5 154 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 A6NDN8 102 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 SULT2B1O00204 365 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 ARAFP10398 606 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 PMCHP20382 165 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 BPIFB3P59826 476 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 HABP2Q14520 560 aaPredicted RBP6.71□□□□□ -1.34
VPS53-204ENST00000437048 OR5AP2Q8NGF4 316 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 C14orf79Q96F83 325 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 BEX2Q9BXY8 128 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 WDR76Q9H967 626 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 A4GALTQ9NPC4 353 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 CBLCQ9ULV8 474 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 FAM221BA6H8Z2 402 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 SEPT4O43236 478 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms