RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 GGTLC2Q14390 218 aa12.9□□□□□ -0.34
RPS28-201ENST00000417088 RNF220Q5VTB9 566 aa12.9□□□□□ -0.34
RPS28-201ENST00000417088 C1orf140Q5VVS0 124 aa12.9□□□□□ -0.34
RPS28-201ENST00000417088 ANKRD16Q6P6B7 361 aa12.9□□□□□ -0.34
RPS28-201ENST00000417088 GLB1L3Q8NCI6 653 aaPredicted RBP12.9□□□□□ -0.34
RPS28-201ENST00000417088 SLC38A5Q8WUX1 472 aa12.9□□□□□ -0.34
RPS28-201ENST00000417088 C3orf49Q96BT1 292 aa12.9□□□□□ -0.34
RPS28-201ENST00000417088 ZBTB9Q96C00 473 aa12.9□□□□□ -0.34
RPS28-201ENST00000417088 FOXN4Q96NZ1 517 aa12.9□□□□□ -0.34
RPS28-201ENST00000417088 PAIP2Q9BPZ3 127 aaKnown RBP12.9□□□□□ -0.34
RPS28-201ENST00000417088 KATNB1Q9BVA0 655 aa12.9□□□□□ -0.34
RPS28-201ENST00000417088 PRR14Q9BWN1 585 aa12.9□□□□□ -0.34
RPS28-201ENST00000417088 CA10Q9NS85 328 aa12.9□□□□□ -0.34
RPS28-201ENST00000417088 CALML5Q9NZT1 146 aa12.9□□□□□ -0.34
RPS28-201ENST00000417088 CRNNQ9UBG3 495 aaPredicted RBP12.9□□□□□ -0.34
RPS28-201ENST00000417088 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.9□□□□□ -0.34
RPS28-201ENST00000417088 FKBP7Q9Y680 259 aa12.9□□□□□ -0.34
RPS28-201ENST00000417088 V9GYY5 206 aaPredicted RBP12.9□□□□□ -0.34
RPS28-201ENST00000417088 ARPC4-TTLL3A0A0A6YYG9 625 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 SLC35F4A4IF30 521 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 OR6C65A6NJZ3 312 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 TMEM229AB2RXF0 380 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 NDUFS8O00217 210 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 NR5A2O00482 541 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 HDAC3O15379 428 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 UPK3AO75631 287 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 CRYAAP02489 173 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 IL6P05231 212 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 ZCCHC18P0CG32 403 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 IGFBP5P24593 272 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 CRISP3P54108 245 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 DSTNP60981 165 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 UBE2NP61088 152 aaKnown RBP12.89□□□□□ -0.35
RPS28-201ENST00000417088 SNRPD2P62316 118 aaKnown RBP12.89□□□□□ -0.35
RPS28-201ENST00000417088 TUBA1BP68363 451 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 TUBA4AP68366 448 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 NAAAQ02083 359 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 LARS2Q15031 903 aaKnown RBP12.89□□□□□ -0.35
RPS28-201ENST00000417088 ADIPOQQ15848 244 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 ZSWIM7Q19AV6 140 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 KRTAP24-1Q3LI83 254 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 RPS26P11Q5JNZ5 115 aaPredicted RBP12.89□□□□□ -0.35
RPS28-201ENST00000417088 PRAMEF8Q5VWM4 474 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 PRAMEF7Q5VXH5 474 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 NIPAL3Q6P499 406 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 TUBA1AQ71U36 451 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 ANKS4BQ8N8V4 417 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 MAGEE2Q8TD90 523 aaPredicted RBP12.89□□□□□ -0.35
RPS28-201ENST00000417088 STK35Q8TDR2 534 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 MSI2Q96DH6 328 aaKnown RBP12.89□□□□□ -0.35
RPS28-201ENST00000417088 ALKBH3Q96Q83 286 aaPredicted RBP12.89□□□□□ -0.35
RPS28-201ENST00000417088 VRK1Q99986 396 aaPredicted RBP12.89□□□□□ -0.35
RPS28-201ENST00000417088 KCNS3Q9BQ31 491 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 PIMREGQ9BSJ6 248 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 SPATA9Q9BWV2 254 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 NELFAQ9H3P2 528 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 CENPHQ9H3R5 247 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 TPT1P8Q9HAU6 139 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 RASD1Q9Y272 281 aa12.89□□□□□ -0.35
RPS28-201ENST00000417088 IGHV4-61A0A0C4DH41 118 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 LOC100289279A0A1B0GTE1 492 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 TRPC5OSA6NMA1 111 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 B9A039 149 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 FTCDNL1E5RQL4 147 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 SLC22A3O75751 556 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 IGLV1-44P01699 117 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 OR4A8P0C604 315 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 CECR9P0C854 216 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 NCF2P19878 526 aaPredicted RBP12.88□□□□□ -0.35
RPS28-201ENST00000417088 PAX7P23759 505 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 CALCRP30988 508 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 THBS2P35442 1172 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 WDR4P57081 412 aaKnown RBP12.88□□□□□ -0.35
RPS28-201ENST00000417088 CARTPTQ16568 116 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 C3orf36Q3SXR2 165 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 GTDC1Q4AE62 458 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 PDCD4Q53EL6 469 aaKnown RBP12.88□□□□□ -0.35
RPS28-201ENST00000417088 CEP85LQ5SZL2 805 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 HHATQ5VTY9 493 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 FAM166AQ6J272 317 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 SLC46A3Q7Z3Q1 461 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 SERPINA11Q86U17 422 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 KDM8Q8N371 416 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 ANKRD42Q8N9B4 389 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 MFSD8Q8NHS3 518 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 TMEM19Q96HH6 336 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 ZNF317Q96PQ6 595 aaPredicted RBP12.88□□□□□ -0.35
RPS28-201ENST00000417088 PTDSS2Q9BVG9 487 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 PARD6BQ9BYG5 372 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 LINC00470Q9BZP3 86 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 SEC61A2Q9H9S3 476 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 THAP1Q9NVV9 213 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 KCNS2Q9ULS6 477 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 ZNF232Q9UNY5 417 aa12.88□□□□□ -0.35
RPS28-201ENST00000417088 NBEAL1Q6ZS30 2694 aa12.87□□□□□ -0.35
RPS28-201ENST00000417088 A0A096LPE4 126 aa12.87□□□□□ -0.35
RPS28-201ENST00000417088 A0A096LPI6 279 aa12.87□□□□□ -0.35
RPS28-201ENST00000417088 A0A0G2JPF8 293 aa12.87□□□□□ -0.35
RPS28-201ENST00000417088 A0A1W2PPZ6 126 aa12.87□□□□□ -0.35
RPS28-201ENST00000417088 LOC390937A0A1W2PQ73 354 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms