RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 hCG_2014768A0A024R1R8 64 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 KDM4EB2RXH2 506 aaPredicted RBP9.25□□□□□ -0.93
VPS53-202ENST00000389040 ALG1L2C9J202 215 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 ACOT7O00154 380 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 CDC42EP2O14613 210 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 MYL12BO14950 172 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 LYPD3O95274 346 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 CCL3P10147 92 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 HPGDP15428 266 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 ZNF12P17014 697 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 PTNP21246 168 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 PLAURQ03405 335 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.25□□□□□ -0.93
VPS53-202ENST00000389040 C17orf67Q0P5P2 114 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 RAB40BQ12829 278 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 TMED1Q13445 227 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 C1DQ13901 141 aaKnown RBP9.25□□□□□ -0.93
VPS53-202ENST00000389040 SSX1Q16384 188 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 NNATQ16517 81 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 PGGHGQ32M88 737 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 KRTCAP3Q53RY4 240 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 PDZK1Q5T2W1 519 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 FAM180AQ6UWF9 173 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 WDR88Q6ZMY6 472 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 IGFN1Q86VF2 1251 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 SLC22A16Q86VW1 577 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 RNF113BQ8IZP6 322 aaKnown RBP9.25□□□□□ -0.93
VPS53-202ENST00000389040 ANKK1Q8NFD2 765 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 OR2M7Q8NG81 312 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 MCFD2Q8NI22 146 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 TMEM239Q8WW34 195 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 RNFT2Q96EX2 444 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 ZNF559Q9BR84 538 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 METTL7AQ9H8H3 244 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 ZFP64Q9NPA5 681 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 MED17Q9NVC6 651 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 MRPS18AQ9NVS2 196 aaKnown RBP9.25□□□□□ -0.93
VPS53-202ENST00000389040 CSAG2Q9Y5P2 127 aa9.25□□□□□ -0.93
VPS53-202ENST00000389040 UNC119BA6NIH7 251 aa9.24□□□□□ -0.93
VPS53-202ENST00000389040 TTLL8A6PVC2 850 aa9.24□□□□□ -0.93
VPS53-202ENST00000389040 SCDO00767 359 aa9.24□□□□□ -0.93
VPS53-202ENST00000389040 SURF4O15260 269 aa9.24□□□□□ -0.93
VPS53-202ENST00000389040 FADS1O60427 444 aa9.24□□□□□ -0.93
VPS53-202ENST00000389040 TRIM3O75382 744 aaPredicted RBP9.24□□□□□ -0.93
VPS53-202ENST00000389040 IGKV1D-16P01601 117 aa9.24□□□□□ -0.93
VPS53-202ENST00000389040 MYL12AP19105 171 aa9.24□□□□□ -0.93
VPS53-202ENST00000389040 MSX1P28360 303 aa9.24□□□□□ -0.93
VPS53-202ENST00000389040 EVI2BP34910 448 aa9.24□□□□□ -0.93
VPS53-202ENST00000389040 ADH7P40394 386 aa9.24□□□□□ -0.93
VPS53-202ENST00000389040 ATP12AP54707 1039 aa9.24□□□□□ -0.93
VPS53-202ENST00000389040 GAS1P54826 345 aa9.24□□□□□ -0.93
VPS53-202ENST00000389040 C19orf57Q0VDD7 668 aa9.24□□□□□ -0.93
VPS53-202ENST00000389040 ZNF404Q494X3 552 aa9.24□□□□□ -0.93
VPS53-202ENST00000389040 ZNF613Q6PF04 617 aa9.24□□□□□ -0.93
VPS53-202ENST00000389040 MFSD4AQ8N468 514 aa9.24□□□□□ -0.93
VPS53-202ENST00000389040 OR2T33Q8NG76 320 aa9.24□□□□□ -0.93
VPS53-202ENST00000389040 RNF217Q8TC41 542 aa9.24□□□□□ -0.93
VPS53-202ENST00000389040 EFHD2Q96C19 240 aaPredicted RBP9.24□□□□□ -0.93
VPS53-202ENST00000389040 DACH2Q96NX9 599 aa9.24□□□□□ -0.93
VPS53-202ENST00000389040 BBC3Q96PG8 261 aaPredicted RBP9.24□□□□□ -0.93
VPS53-202ENST00000389040 MMP27Q9H306 513 aa9.24□□□□□ -0.93
VPS53-202ENST00000389040 RNF167Q9H6Y7 350 aa9.24□□□□□ -0.93
VPS53-202ENST00000389040 KLHL1Q9NR64 748 aa9.24□□□□□ -0.93
VPS53-202ENST00000389040 CCDC59Q9P031 241 aaKnown RBP9.24□□□□□ -0.93
VPS53-202ENST00000389040 MRPS18CQ9Y3D5 142 aaKnown RBP9.24□□□□□ -0.93
VPS53-202ENST00000389040 IGLV3-32A0A0A0MS00 114 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 METTL15A6NJ78 407 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 NPIPB9F8W1W9 429 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 ICOSLGO75144 302 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 CBR3O75828 277 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 GLSO94925 669 aaPredicted RBP9.23□□□□□ -0.93
VPS53-202ENST00000389040 UTS2O95399 124 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 CH25HO95992 272 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 F10P00742 488 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 BMP4P12644 408 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 MTNR1AP48039 350 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 RPS3AP61247 264 aaKnown RBP9.23□□□□□ -0.93
VPS53-202ENST00000389040 PRKCDQ05655 676 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 FOXO1Q12778 655 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 MLLT11Q13015 90 aaPredicted RBP9.23□□□□□ -0.93
VPS53-202ENST00000389040 ZNF141Q15928 474 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 TMEM44Q2T9K0 475 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 KLHL26Q53HC5 615 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 PAQR6Q6TCH4 344 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 Q6ZNX1 250 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 BTLAQ7Z6A9 289 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 GRAMD2AQ8IUY3 354 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 CMIPQ8IY22 773 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 PRR22Q8IZ63 422 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 ZNF843Q8N446 348 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 ZNF614Q8N883 585 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 OR5M3Q8NGP4 307 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 PFN4Q8NHR9 129 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 FANK1Q8TC84 345 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 CNOT9Q92600 299 aaKnown RBP9.23□□□□□ -0.93
VPS53-202ENST00000389040 RFKQ969G6 155 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 SAMD8Q96LT4 415 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 TBL1XR1Q9BZK7 514 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 TMEM27Q9HBJ8 222 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 PROK2Q9HC23 129 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms