RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 UGDHO60701 494 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 HLA-FP30511 346 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 PHLDA2Q53GA4 152 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 RDH10Q8IZV5 341 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 MUL1Q969V5 352 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 INTS12Q96CB8 462 aaKnown RBP12.74□□□□□ -0.37
COL4A1-201ENST00000375820 LMF2Q9BU23 707 aaKnown RBP12.74□□□□□ -0.37
COL4A1-201ENST00000375820 GSTP1P09211 210 aaKnown RBP12.74□□□□□ -0.37
COL4A1-201ENST00000375820 PKLRP30613 574 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 SUOXP51687 545 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 SLC6A19Q695T7 634 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 LGALS14Q8TCE9 139 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 HPSE2Q8WWQ2 592 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 TFAP2CQ92754 450 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 CLMPQ9H6B4 373 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 MYOTQ9UBF9 498 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 ZNF281Q9Y2X9 895 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 CEPT1Q9Y6K0 416 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 PHLPP1O60346 1717 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 C17orf113A0A1B0GUU1 675 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 T-ENOLP0DO92 83 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 ACP2P11117 423 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 ARFGAP1Q8N6T3 406 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 C20orf24Q9BUV8 137 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 TM7SF3Q9NS93 570 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 PIGBOS1A0A0B4J2F0 54 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 CDHR4A6H8M9 788 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 APOA2P02652 100 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 SHC1P29353 583 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 HTR3AP46098 478 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 MARCH8Q5T0T0 291 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 AAED1Q7RTV5 226 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 SLC43A2Q8N370 569 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 TCTN2Q96GX1 697 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 SCML1Q9UN30 329 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 KCPQ6ZWJ8 1503 aa12.74□□□□□ -0.37
COL4A1-201ENST00000375820 NAP1L6A6NFF2 107 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 OR7A17O14581 309 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 OR10J4P0C629 311 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 DEFA4P12838 97 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 BLVRBP30043 206 aaPredicted RBP12.73□□□□□ -0.37
COL4A1-201ENST00000375820 EMP3P54852 163 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 KIAA0907Q7Z7F0 614 aaPredicted RBP12.73□□□□□ -0.37
COL4A1-201ENST00000375820 SLC7A13Q8TCU3 470 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 TMEM255BQ8WV15 326 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 C3orf49Q96BT1 292 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 NOX4Q9NPH5 578 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 HS3ST1O14792 307 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 CNMDO75829 334 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 PLA2G7Q13093 441 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 KCNIP4Q6PIL6 250 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 GPR150Q8NGU9 434 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 SLC41A2Q96JW4 573 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 ZNF75AQ96N20 296 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 DCLRE1CQ96SD1 692 aaKnown RBP12.73□□□□□ -0.37
COL4A1-201ENST00000375820 FIZ1Q96SL8 496 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 BOKQ9UMX3 212 aaPredicted RBP12.73□□□□□ -0.37
COL4A1-201ENST00000375820 FBXO7Q9Y3I1 522 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 PARP4Q9UKK3 1724 aaKnown RBP12.73□□□□□ -0.37
COL4A1-201ENST00000375820 SULT1C2O00338 296 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 FGF4P08620 206 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 POLR2IP36954 125 aaKnown RBP12.73□□□□□ -0.37
COL4A1-201ENST00000375820 ARL6IP1Q15041 203 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 FAM78AQ5JUQ0 283 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 ARSGQ96EG1 525 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 ARNT2Q9HBZ2 717 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 CPNE5Q9HCH3 593 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 GLTPQ9NZD2 209 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 NPC1O15118 1278 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 ZNF264O43296 627 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 TP53P04637 393 aaPredicted RBP12.73□□□□□ -0.37
COL4A1-201ENST00000375820 RELAQ04206 551 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 VEZF1Q14119 521 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 COX20Q5RI15 118 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 SYT9Q86SS6 491 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 FAM185AQ8N0U4 392 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 KHSRPQ92945 711 aaKnown RBP eCLIP12.73□□□□□ -0.37
COL4A1-201ENST00000375820 RAB3CQ96E17 227 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 C1GALT1Q9NS00 363 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 ANKRD12Q6UB98 2062 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 MCRIP1C9JLW8 97 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 ARHGAP11BQ3KRB8 267 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 SMIM15Q7Z3B0 74 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 SLC35F3Q8IY50 421 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 OR2T11Q8NH01 316 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 CHST11Q9NPF2 352 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 STEAP1Q9UHE8 339 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 MRPS28Q9Y2Q9 187 aaKnown RBP12.73□□□□□ -0.37
COL4A1-201ENST00000375820 GON4LQ3T8J9 2241 aa12.73□□□□□ -0.37
COL4A1-201ENST00000375820 PHF1O43189 567 aaPredicted RBP12.72□□□□□ -0.37
COL4A1-201ENST00000375820 SNCAP37840 140 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 CGB2Q6NT52 195 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 MARCH3Q86UD3 253 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 ADIPOR2Q86V24 386 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 C19orf47Q8N9M1 422 aaKnown RBP12.72□□□□□ -0.37
COL4A1-201ENST00000375820 UTP4Q969X6 686 aaKnown RBP12.72□□□□□ -0.37
COL4A1-201ENST00000375820 ANKRD9Q96BM1 317 aaPredicted RBP12.72□□□□□ -0.37
COL4A1-201ENST00000375820 NRSN2Q9GZP1 204 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 DNMT3BQ9UBC3 853 aaKnown RBP12.72□□□□□ -0.37
COL4A1-201ENST00000375820 NEURL4Q96JN8 1562 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms