RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 C2orf42Q9NWW7 574 aa19.41■□□□□ 0.7
UPF3A-202ENST00000375299 FLRT3Q9NZU0 649 aa19.41■□□□□ 0.7
UPF3A-202ENST00000375299 FBXL21Q9UKT6 434 aa19.41■□□□□ 0.7
UPF3A-202ENST00000375299 ZNF281Q9Y2X9 895 aa19.41■□□□□ 0.7
UPF3A-202ENST00000375299 A0A1B0GWA3 101 aa19.4■□□□□ 0.7
UPF3A-202ENST00000375299 GXYLT2A0PJZ3 443 aa19.4■□□□□ 0.7
UPF3A-202ENST00000375299 ANXA2P2A6NMY6 339 aa19.4■□□□□ 0.7
UPF3A-202ENST00000375299 NGFRP08138 427 aa19.4■□□□□ 0.7
UPF3A-202ENST00000375299 CALCBP10092 127 aa19.4■□□□□ 0.7
UPF3A-202ENST00000375299 CDK2P24941 298 aa19.4■□□□□ 0.7
UPF3A-202ENST00000375299 MNDAP41218 407 aa19.4■□□□□ 0.7
UPF3A-202ENST00000375299 RPS15P62841 145 aaKnown RBP19.4■□□□□ 0.7
UPF3A-202ENST00000375299 GK2Q14410 553 aaPredicted RBP19.4■□□□□ 0.7
UPF3A-202ENST00000375299 USP53Q70EK8 1073 aa19.4■□□□□ 0.7
UPF3A-202ENST00000375299 OR1F2PQ96R84 312 aa19.4■□□□□ 0.7
UPF3A-202ENST00000375299 GINS4Q9BRT9 223 aa19.4■□□□□ 0.7
UPF3A-202ENST00000375299 OPN4Q9UHM6 478 aa19.4■□□□□ 0.7
UPF3A-202ENST00000375299 SELENOFO60613 162 aa19.4■□□□□ 0.7
UPF3A-202ENST00000375299 MAGEB1P43366 347 aa19.4■□□□□ 0.7
UPF3A-202ENST00000375299 TPMTP51580 245 aa19.4■□□□□ 0.7
UPF3A-202ENST00000375299 TAS2R20P59543 309 aa19.4■□□□□ 0.7
UPF3A-202ENST00000375299 LGALS3BPQ08380 585 aa19.4■□□□□ 0.7
UPF3A-202ENST00000375299 CBFBQ13951 182 aa19.4■□□□□ 0.7
UPF3A-202ENST00000375299 PAQR7Q86WK9 346 aa19.4■□□□□ 0.7
UPF3A-202ENST00000375299 ZNF426Q9BUY5 554 aa19.4■□□□□ 0.7
UPF3A-202ENST00000375299 ARL6Q9H0F7 186 aa19.4■□□□□ 0.7
UPF3A-202ENST00000375299 IL21RQ9HBE5 538 aa19.4■□□□□ 0.7
UPF3A-202ENST00000375299 MED11Q9P086 117 aa19.4■□□□□ 0.7
UPF3A-202ENST00000375299 SCN2AQ99250 2005 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 UBE2QL1A1L167 161 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 PYCARD-AS1I3L0S3 204 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 NARSO43776 548 aaKnown RBP19.39■□□□□ 0.69
UPF3A-202ENST00000375299 VSIG10L2P0DP72 767 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 DIO1P49895 249 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 MAZP56270 477 aaKnown RBP19.39■□□□□ 0.69
UPF3A-202ENST00000375299 PON3Q15166 354 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 IRF4Q15306 451 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 GSG1LQ6UXU4 331 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 CDRT4Q8N9R6 151 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 C15orf40Q8WUR7 153 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 ZNRF4Q8WWF5 429 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 NSMAFQ92636 917 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 STACQ99469 402 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 ZDHHC4Q9NPG8 344 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 DEC1Q9P2X7 70 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 IER3IP1Q9Y5U9 82 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 MYO7AQ13402 2215 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 TCRBV16S1A1N1A0A5B0 115 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 LDOC1O95751 146 aaPredicted RBP19.39■□□□□ 0.69
UPF3A-202ENST00000375299 RBM34P42696 430 aaKnown RBP19.39■□□□□ 0.69
UPF3A-202ENST00000375299 ART1P52961 327 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 ID2Q02363 134 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 RUNX2Q13950 521 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 STPG2Q8N412 459 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 ZCCHC10Q8TBK6 192 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 NT5CQ8TCD5 201 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 SUSD6Q92537 303 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 RGP1Q92546 391 aaPredicted RBP19.39■□□□□ 0.69
UPF3A-202ENST00000375299 MIB2Q96AX9 1013 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 PTCHD1Q96NR3 888 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 INSL6Q9Y581 213 aa19.39■□□□□ 0.69
UPF3A-202ENST00000375299 CHD7Q9P2D1 2997 aa19.38■□□□□ 0.69
UPF3A-202ENST00000375299 IDSB3KWA1 339 aa19.38■□□□□ 0.69
UPF3A-202ENST00000375299 NDUFB2O95178 105 aa19.38■□□□□ 0.69
UPF3A-202ENST00000375299 RPS15AP62244 130 aaKnown RBP19.38■□□□□ 0.69
UPF3A-202ENST00000375299 CSRP2Q16527 193 aa19.38■□□□□ 0.69
UPF3A-202ENST00000375299 CACUL1Q86Y37 369 aa19.38■□□□□ 0.69
UPF3A-202ENST00000375299 OR5M1Q8NGP8 315 aa19.38■□□□□ 0.69
UPF3A-202ENST00000375299 OR1S1Q8NH92 325 aa19.38■□□□□ 0.69
UPF3A-202ENST00000375299 SIPA1Q96FS4 1042 aa19.38■□□□□ 0.69
UPF3A-202ENST00000375299 SERINC2Q96SA4 455 aa19.38■□□□□ 0.69
UPF3A-202ENST00000375299 MRPS23Q9Y3D9 190 aaKnown RBP19.38■□□□□ 0.69
UPF3A-202ENST00000375299 TICRRQ7Z2Z1 1910 aa19.38■□□□□ 0.69
UPF3A-202ENST00000375299 FXYD6-FXYD2A0A087WZ82 144 aa19.37■□□□□ 0.69
UPF3A-202ENST00000375299 BRINP1O60477 761 aa19.37■□□□□ 0.69
UPF3A-202ENST00000375299 DNAJB6O75190 326 aa19.37■□□□□ 0.69
UPF3A-202ENST00000375299 SIX6O95475 246 aa19.37■□□□□ 0.69
UPF3A-202ENST00000375299 HNRNPA1P09651 372 aaKnown RBP eCLIP19.37■□□□□ 0.69
UPF3A-202ENST00000375299 TLX1P31314 330 aaPredicted RBP19.37■□□□□ 0.69
UPF3A-202ENST00000375299 DRD3P35462 400 aa19.37■□□□□ 0.69
UPF3A-202ENST00000375299 VIPR2P41587 438 aa19.37■□□□□ 0.69
UPF3A-202ENST00000375299 NANOS3P60323 173 aaKnown RBP19.37■□□□□ 0.69
UPF3A-202ENST00000375299 MAT1AQ00266 395 aaKnown RBP19.37■□□□□ 0.69
UPF3A-202ENST00000375299 ZMYND11Q15326 602 aa19.37■□□□□ 0.69
UPF3A-202ENST00000375299 SLC36A1Q7Z2H8 476 aa19.37■□□□□ 0.69
UPF3A-202ENST00000375299 PDZD9Q8IXQ8 264 aa19.37■□□□□ 0.69
UPF3A-202ENST00000375299 HSPA12BQ96MM6 686 aa19.37■□□□□ 0.69
UPF3A-202ENST00000375299 MYADMQ96S97 322 aa19.37■□□□□ 0.69
UPF3A-202ENST00000375299 FXYD6Q9H0Q3 95 aa19.37■□□□□ 0.69
UPF3A-202ENST00000375299 PHPT1Q9NRX4 125 aaPredicted RBP19.37■□□□□ 0.69
UPF3A-202ENST00000375299 ETV7Q9Y603 341 aa19.37■□□□□ 0.69
UPF3A-202ENST00000375299 LOC105378220A0A1B0GUY1 285 aaPredicted RBP19.37■□□□□ 0.69
UPF3A-202ENST00000375299 MCIDASD6RGH6 385 aa19.37■□□□□ 0.69
UPF3A-202ENST00000375299 WDPCPO95876 746 aa19.37■□□□□ 0.69
UPF3A-202ENST00000375299 AK1P00568 194 aa19.37■□□□□ 0.69
UPF3A-202ENST00000375299 ZNF35P13682 527 aa19.37■□□□□ 0.69
UPF3A-202ENST00000375299 CTNNB1P35222 781 aa19.37■□□□□ 0.69
UPF3A-202ENST00000375299 H2BFSP57053 126 aa19.37■□□□□ 0.69
UPF3A-202ENST00000375299 DEFB134Q4QY38 66 aa19.37■□□□□ 0.69
UPF3A-202ENST00000375299 SLC35F3Q8IY50 421 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms