RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 ARFIP1P53367 373 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 AP3S2P59780 193 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 GXYLT1Q4G148 440 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 ZNF626Q68DY1 528 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 ZC3H14Q6PJT7 736 aaKnown RBP12.59□□□□□ -0.39
USP49-201ENST00000373006 TMPRSS11FQ6ZWK6 438 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 GRASPQ7Z6J2 395 aaPredicted RBP12.59□□□□□ -0.39
USP49-201ENST00000373006 RNF113BQ8IZP6 322 aaKnown RBP12.59□□□□□ -0.39
USP49-201ENST00000373006 DNAAF1Q8NEP3 725 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 OR52E1Q8NGJ3 308 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 ZCCHC10Q8TBK6 192 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 ZDHHC1Q8WTX9 485 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 S100A16Q96FQ6 103 aaKnown RBP12.59□□□□□ -0.39
USP49-201ENST00000373006 LCORQ96JN0 433 aaPredicted RBP12.59□□□□□ -0.39
USP49-201ENST00000373006 TINAGL1Q9GZM7 467 aaPredicted RBP12.59□□□□□ -0.39
USP49-201ENST00000373006 TSPAN10Q9H1Z9 355 aaPredicted RBP12.59□□□□□ -0.39
USP49-201ENST00000373006 TMEM74BQ9NUR3 256 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 AKAP7Q9P0M2 348 aaPredicted RBP12.59□□□□□ -0.39
USP49-201ENST00000373006 ADAM18Q9Y3Q7 739 aa12.59□□□□□ -0.39
USP49-201ENST00000373006 TBC1D3KA0A087X1G2 549 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 TBC1D3BA6NDS4 549 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 TBC1D3FA6NER0 549 aaPredicted RBP12.58□□□□□ -0.4
USP49-201ENST00000373006 H7C2Y5 167 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 PTP4A3O75365 173 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 IGF2P01344 180 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 ADH1AP07327 375 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 VSIG10L2P0DP72 767 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 P2RY2P41231 377 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 VIPR2P41587 438 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 FAM74A1Q5RGS3 127 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 TBC1D3GQ6DHY5 549 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 SLC16A13Q7RTY0 426 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 BVESQ8NE79 360 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 OR2L3Q8NG85 312 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 OR6K6Q8NGW6 343 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 SCARB1Q8WTV0 552 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 ACTR10Q9NZ32 417 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 NOTCH4Q99466 2003 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 A0A1B0GVT2 93 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 ANKRD20A5PA0PJZ0 165 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 OR2A4O95047 310 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 RPP14O95059 124 aaKnown RBP12.58□□□□□ -0.4
USP49-201ENST00000373006 ZNF888P0CJ79 500 aaPredicted RBP12.58□□□□□ -0.4
USP49-201ENST00000373006 ZNF35P13682 527 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 WASP42768 502 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 SOX2P48431 317 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 POLR2GP62487 172 aaKnown RBP eCLIP12.58□□□□□ -0.4
USP49-201ENST00000373006 DHODHQ02127 395 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 PLA2G7Q13093 441 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 EIPR1Q53HC9 387 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 OVCH2Q7RTZ1 564 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 SLC35F2Q8IXU6 374 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 LRRC46Q96FV0 321 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 OR2A7Q96R45 310 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 GPN1Q9HCN4 374 aaPredicted RBP12.58□□□□□ -0.4
USP49-201ENST00000373006 SLC22A11Q9NSA0 550 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 OR5V1Q9UGF6 321 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 FOXJ3Q9UPW0 622 aa12.58□□□□□ -0.4
USP49-201ENST00000373006 ZNF860A6NHJ4 632 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 ZNF879B4DU55 563 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 AIPO00170 330 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 FKTNO75072 461 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 HIST1H2ABP04908 130 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 NGFRP08138 427 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 ADH5P11766 374 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 GABRA1P14867 456 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 CPN1P15169 458 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 CBFBQ13951 182 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 HNRNPA1L2Q32P51 320 aaKnown RBP12.57□□□□□ -0.4
USP49-201ENST00000373006 DEFB134Q4QY38 66 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 DCST2Q5T1A1 773 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 DCAF12L2Q5VW00 463 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 HIST3H2AQ7L7L0 130 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 ANKRD33Q7Z3H0 272 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 HIST1H2ACQ93077 130 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 C10orf90Q96M02 699 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 CNN2Q99439 309 aaKnown RBP12.57□□□□□ -0.4
USP49-201ENST00000373006 DPYSL5Q9BPU6 564 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 LDAHQ9H6V9 325 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 ZNF275Q9NSD4 429 aaPredicted RBP12.57□□□□□ -0.4
USP49-201ENST00000373006 ZNF346Q9UL40 294 aaKnown RBP12.57□□□□□ -0.4
USP49-201ENST00000373006 ACSL5Q9ULC5 683 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 OR10H1Q9Y4A9 318 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 IER3IP1Q9Y5U9 82 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 MEIS3P1A6NDR6 274 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 NAP1L6A6NFF2 107 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 PRSS44E7EML9 344 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 RNGTTO60942 597 aaKnown RBP12.57□□□□□ -0.4
USP49-201ENST00000373006 NID1P14543 1247 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 TYRP1P17643 537 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 NANOS3P60323 173 aaKnown RBP12.57□□□□□ -0.4
USP49-201ENST00000373006 PPP2CBP62714 309 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 PPP2CAP67775 309 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 CSRP2Q16527 193 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 ELFN2Q5R3F8 820 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 OR7E24Q6IFN5 339 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 RPL22L1Q6P5R6 122 aaKnown RBP12.57□□□□□ -0.4
USP49-201ENST00000373006 CNKSR3Q6P9H4 555 aa12.57□□□□□ -0.4
USP49-201ENST00000373006 FIP1L1Q6UN15 594 aaKnown RBP12.57□□□□□ -0.4
USP49-201ENST00000373006 GSG1LQ6UXU4 331 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms