RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ZFP82Q8N141 532 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 OR51D1Q8NGF3 324 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 NMNAT2Q9BZQ4 307 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 PIGMQ9H3S5 423 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 LILRB5O75023 590 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 AIFM1O95831 613 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 CD79BP40259 229 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 SLC6A8P48029 635 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 PDZK1IP1Q13113 114 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 SLC35D2Q76EJ3 337 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 TMEM179BQ7Z7N9 219 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 TEX19Q8NA77 164 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 OR51Q1Q8NH59 317 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 SORCS2Q96PQ0 1159 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 FAM221BA6H8Z2 402 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 KDM4EB2RXH2 506 aaPredicted RBP18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 PRSS44E7EML9 344 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 M0QYG6 137 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 F3P13726 295 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 TIMP2P16035 220 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 RBM45Q8IUH3 476 aaKnown RBP18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 C12orf76Q8N812 135 aaPredicted RBP18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 SLC30A7Q8NEW0 376 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 OR52E1Q8NGJ3 308 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 NKX6-2Q9C056 277 aaPredicted RBP18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 ZMAT3Q9HA38 289 aaKnown RBP18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 ASIC5Q9NY37 505 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 KIF25Q9UIL4 384 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 TEAD1P28347 426 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 XCR1P46094 333 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 P2RX3P56373 397 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 FLI1Q01543 452 aaPredicted RBP18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 EXOSC2Q13868 293 aaKnown RBP18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 OCSTAMPQ9BR26 566 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 CREBZFQ9NS37 354 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 SLC22A7Q9Y694 548 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 NRAPQ86VF7 1730 aa18.14■□□□□ 0.5
CCDC88B-202ENST00000356786 TTLL8A6PVC2 850 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 KCNK2O95069 426 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 SERTAD2Q14140 314 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 MORN1Q5T089 497 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 RCBTB1Q8NDN9 531 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 FAM213BQ8TBF2 198 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 MAP6Q96JE9 813 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 ERVMER34-1Q9H9K5 563 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 STMND1H3BQB6 276 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 CNR1P21554 472 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 FPR3P25089 353 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 HTR2CP28335 458 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 HMGN3Q15651 99 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 LIX1LQ8IVB5 337 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 CMIPQ8IY22 773 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 DIO2Q92813 273 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 NMNAT3Q96T66 252 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 SAMD10Q9BYL1 202 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 NDUFB11Q9NX14 153 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 GPR34Q9UPC5 381 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 A0A0A6YYC8 382 aaPredicted RBP18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 RAB19A4D1S5 217 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 I3L1I5 382 aaPredicted RBP18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 SGK494L7N484 410 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 GABRB1P18505 474 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 ACSM1Q08AH1 577 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 MALLQ13021 153 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 PARS2Q7L3T8 475 aaKnown RBP18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 GPR137CQ8N3F9 429 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 KLHDC9Q8NEP7 349 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 C2CD4CQ8TF44 421 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 DDIT4LQ96D03 193 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 ADOQ96SZ5 270 aa18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 NAA11Q9BSU3 229 aaPredicted RBP18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 PURGQ9UJV8 347 aaKnown RBP18.14■□□□□ 0.49
CCDC88B-202ENST00000356786 TMEM212A6NML5 194 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 H3BUI4 141 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 B3GALT4O96024 378 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 SERPINA7P05543 415 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 IGFBP1P08833 259 aaPredicted RBP18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 CPMP14384 443 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 HOXB9P17482 250 aaPredicted RBP18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 CSNK1DP48730 415 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 HSF5Q4G112 596 aaPredicted RBP18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 DPY19L4Q7Z388 723 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 TMEM255BQ8WV15 326 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 HSFX1Q9UBD0 423 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 NUDT21O43809 227 aaKnown RBP18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 ADRB1P08588 477 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 GIPP09681 153 aaPredicted RBP18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 CCL5P13501 91 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 SPNP16150 400 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 DAP3P51398 398 aaKnown RBP18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 HHEXQ03014 270 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 TOR2AQ5JU69 321 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 FAM69BQ5VUD6 431 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 VRK3Q8IV63 474 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 MIB2Q96AX9 1013 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 C14orf79Q96F83 325 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 TGIF2Q9GZN2 237 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 SLC25A31Q9H0C2 315 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 ATP13A2Q9NQ11 1180 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 HEPACAM2A8MVW5 462 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms