RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 ALPK2Q86TB3 2170 aa8.41□□□□□ -1.06
ATG4A-202ENST00000345734 COL27A1Q8IZC6 1860 aaPredicted RBP8.41□□□□□ -1.06
ATG4A-202ENST00000345734 IGKV1D-42A0A075B6H8 117 aa8.41□□□□□ -1.06
ATG4A-202ENST00000345734 LOC100506127A0A0U1RQW1 187 aa8.41□□□□□ -1.06
ATG4A-202ENST00000345734 ZC3H12DA2A288 527 aaKnown RBP8.41□□□□□ -1.06
ATG4A-202ENST00000345734 SAGE2PA6NJ88 616 aa8.41□□□□□ -1.06
ATG4A-202ENST00000345734 OR6C76A6NM76 312 aa8.41□□□□□ -1.06
ATG4A-202ENST00000345734 HCN1O60741 890 aa8.41□□□□□ -1.06
ATG4A-202ENST00000345734 ZNF354AO60765 605 aaPredicted RBP8.41□□□□□ -1.06
ATG4A-202ENST00000345734 PPP1R3DO95685 299 aa8.41□□□□□ -1.06
ATG4A-202ENST00000345734 ONECUT2O95948 504 aa8.41□□□□□ -1.06
ATG4A-202ENST00000345734 HBQ1P09105 142 aa8.41□□□□□ -1.06
ATG4A-202ENST00000345734 TCEA1P23193 301 aaKnown RBP8.41□□□□□ -1.06
ATG4A-202ENST00000345734 SOX3P41225 446 aa8.41□□□□□ -1.06
ATG4A-202ENST00000345734 ENTPD1P49961 510 aa8.41□□□□□ -1.06
ATG4A-202ENST00000345734 ZNF117Q03924 483 aa8.41□□□□□ -1.06
ATG4A-202ENST00000345734 ZFP36L1Q07352 338 aaKnown RBP8.41□□□□□ -1.06
ATG4A-202ENST00000345734 SSX1Q16384 188 aa8.41□□□□□ -1.06
ATG4A-202ENST00000345734 GXYLT1Q4G148 440 aa8.41□□□□□ -1.06
ATG4A-202ENST00000345734 KLHL22Q53GT1 634 aa8.41□□□□□ -1.06
ATG4A-202ENST00000345734 RNLSQ5VYX0 342 aa8.41□□□□□ -1.06
ATG4A-202ENST00000345734 WBP2NLQ6ICG8 309 aa8.41□□□□□ -1.06
ATG4A-202ENST00000345734 FAM199XQ6PEV8 388 aaPredicted RBP8.41□□□□□ -1.06
ATG4A-202ENST00000345734 TREML4Q6UXN2 200 aa8.41□□□□□ -1.06
ATG4A-202ENST00000345734 CXXC5Q7LFL8 322 aaKnown RBP8.41□□□□□ -1.06
ATG4A-202ENST00000345734 ARMC10Q8N2F6 343 aa8.41□□□□□ -1.06
ATG4A-202ENST00000345734 SGTBQ96EQ0 304 aa8.41□□□□□ -1.06
ATG4A-202ENST00000345734 CEP19Q96LK0 163 aa8.41□□□□□ -1.06
ATG4A-202ENST00000345734 MND1Q9BWT6 205 aa8.41□□□□□ -1.06
ATG4A-202ENST00000345734 HCAR1Q9BXC0 346 aa8.41□□□□□ -1.06
ATG4A-202ENST00000345734 ZBTB20Q9HC78 741 aaPredicted RBP8.41□□□□□ -1.06
ATG4A-202ENST00000345734 FGF20Q9NP95 211 aaPredicted RBP8.41□□□□□ -1.06
ATG4A-202ENST00000345734 EXOSC3Q9NQT5 275 aaKnown RBP8.41□□□□□ -1.06
ATG4A-202ENST00000345734 MED17Q9NVC6 651 aa8.41□□□□□ -1.06
ATG4A-202ENST00000345734 PMF1-BGLAPU3KQ54 211 aa8.41□□□□□ -1.06
ATG4A-202ENST00000345734 PRR33A8MZF0 331 aa8.4□□□□□ -1.06
ATG4A-202ENST00000345734 M0R3G1 203 aa8.4□□□□□ -1.06
ATG4A-202ENST00000345734 LDOC1O95751 146 aaPredicted RBP8.4□□□□□ -1.06
ATG4A-202ENST00000345734 CD79BP40259 229 aa8.4□□□□□ -1.06
ATG4A-202ENST00000345734 SLC9A3P48764 834 aa8.4□□□□□ -1.06
ATG4A-202ENST00000345734 RAB40BQ12829 278 aa8.4□□□□□ -1.06
ATG4A-202ENST00000345734 SPHARQ15513 63 aa8.4□□□□□ -1.06
ATG4A-202ENST00000345734 TOMM34Q15785 309 aaPredicted RBP8.4□□□□□ -1.06
ATG4A-202ENST00000345734 ZNF528Q3MIS6 628 aa8.4□□□□□ -1.06
ATG4A-202ENST00000345734 RPL13AP3Q6NVV1 102 aa8.4□□□□□ -1.06
ATG4A-202ENST00000345734 PAPD4Q6PIY7 484 aaKnown RBP8.4□□□□□ -1.06
ATG4A-202ENST00000345734 USP43Q70EL4 1123 aa8.4□□□□□ -1.06
ATG4A-202ENST00000345734 FGD2Q7Z6J4 655 aa8.4□□□□□ -1.06
ATG4A-202ENST00000345734 ATG4DQ86TL0 474 aaPredicted RBP8.4□□□□□ -1.06
ATG4A-202ENST00000345734 IGFN1Q86VF2 1251 aa8.4□□□□□ -1.06
ATG4A-202ENST00000345734 AGBL5Q8NDL9 886 aa8.4□□□□□ -1.06
ATG4A-202ENST00000345734 PROKR2Q8NFJ6 384 aa8.4□□□□□ -1.06
ATG4A-202ENST00000345734 DYNC2LI1Q8TCX1 351 aa8.4□□□□□ -1.06
ATG4A-202ENST00000345734 METTL21AQ8WXB1 218 aa8.4□□□□□ -1.06
ATG4A-202ENST00000345734 CHCHD6Q9BRQ6 235 aa8.4□□□□□ -1.06
ATG4A-202ENST00000345734 CRB3Q9BUF7 120 aa8.4□□□□□ -1.06
ATG4A-202ENST00000345734 SEMA4CQ9C0C4 833 aa8.4□□□□□ -1.06
ATG4A-202ENST00000345734 LAT2Q9GZY6 243 aa8.4□□□□□ -1.06
ATG4A-202ENST00000345734 RXFP3Q9NSD7 469 aa8.4□□□□□ -1.06
ATG4A-202ENST00000345734 KCNN3Q9UGI6 736 aa8.4□□□□□ -1.06
ATG4A-202ENST00000345734 ICAM5Q9UMF0 924 aa8.4□□□□□ -1.06
ATG4A-202ENST00000345734 PCDHGA3Q9Y5H0 932 aa8.4□□□□□ -1.06
ATG4A-202ENST00000345734 CACNA1HO95180 2353 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 TRBV11-1A0A0K0K1C0 115 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 TEX51A0A1B0GUA7 166 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 ALG1L2C9J202 215 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 WWP2O00308 870 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 MYL12BO14950 172 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 HCRTR2O43614 444 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 SCO2O43819 266 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 SULT1C4O75897 302 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 CLPXO76031 633 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 SCG5P05408 212 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 CFL1P23528 166 aaKnown RBP8.39□□□□□ -1.07
ATG4A-202ENST00000345734 AVPR2P30518 371 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 HTR1FP30939 366 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 GRK6P43250 576 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 PNLIPRP2P54317 469 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 IL11RAQ14626 422 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 C3orf38Q5JPI3 329 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 OR2G6Q5TZ20 316 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 NXNL2Q5VZ03 156 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 NIPAL3Q6P499 406 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 RTL4Q6ZR62 310 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 CPEB2Q7Z5Q1 589 aaKnown RBP8.39□□□□□ -1.07
ATG4A-202ENST00000345734 CYB561A3Q8NBI2 242 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 OR5M3Q8NGP4 307 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 ZNF563Q8TA94 476 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 RNF141Q8WVD5 230 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 OIT3Q8WWZ8 545 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 RFKQ969G6 155 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 TBL1XR1Q9BZK7 514 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 MARCH7Q9H992 704 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 C12orf4Q9NQ89 552 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 CPAMD8Q8IZJ3 1885 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 EML6Q6ZMW3 1958 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 SHISA3A0PJX4 238 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 LNP1A1A4G5 178 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 TMEM200CA6NKL6 621 aa8.39□□□□□ -1.07
ATG4A-202ENST00000345734 CCRL2O00421 344 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms