RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 PRAMEF26H0Y7S4 382 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 AKR7A2O43488 359 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 IGFBP6P24592 240 aaPredicted RBP10.7□□□□□ -0.7
VPS39-201ENST00000318006 CLDN2P57739 230 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 RPL23AP62750 156 aaKnown RBP10.7□□□□□ -0.7
VPS39-201ENST00000318006 HOXC5Q00444 222 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 AANATQ16613 207 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 GGTA1PQ4G0N0 100 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 Q6ZSR6 202 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 TCTE3Q8IZS6 198 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 OR6F1Q8NGZ6 308 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 BTBD2Q9BX70 525 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 MCCC2Q9HCC0 563 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 RHBDD3Q9Y3P4 386 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.7□□□□□ -0.7
VPS39-201ENST00000318006 IMPA2O14732 288 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 TRAPPC6AO75865 159 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 HTR3BO95264 441 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 CNOT4O95628 575 aaKnown RBP10.7□□□□□ -0.7
VPS39-201ENST00000318006 PNMTP11086 282 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 GJA4P35212 333 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 PLGLB1Q02325 96 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 SLC14A1Q13336 389 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 TNK1Q13470 666 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 SYPL1Q16563 259 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 HYAL4Q2M3T9 481 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 FAM78AQ5JUQ0 283 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 OTUD1Q5VV17 481 aaPredicted RBP10.7□□□□□ -0.7
VPS39-201ENST00000318006 MEX3BQ6ZN04 569 aaKnown RBP10.7□□□□□ -0.7
VPS39-201ENST00000318006 OR1M1Q8NGA1 313 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 OR4D6Q8NGJ1 314 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 OR9A2Q8NGT5 310 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 TIMM29Q9BSF4 260 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 SLC25A32Q9H2D1 315 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 ATXN7L1Q9ULK2 861 aaPredicted RBP10.7□□□□□ -0.7
VPS39-201ENST00000318006 SLC6A14Q9UN76 642 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 WIF1Q9Y5W5 379 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 C17orf113A0A1B0GUU1 675 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 ACOD1A6NK06 481 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 HMGA1P17096 107 aaKnown RBP10.7□□□□□ -0.7
VPS39-201ENST00000318006 ELK1P19419 428 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 CLDN12P56749 244 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 SIRPAP78324 504 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 GAB1Q13480 694 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 COL9A2Q14055 689 aaPredicted RBP10.7□□□□□ -0.7
VPS39-201ENST00000318006 EBPQ15125 230 aaKnown RBP10.7□□□□□ -0.7
VPS39-201ENST00000318006 CLPPQ16740 277 aaPredicted RBP10.7□□□□□ -0.7
VPS39-201ENST00000318006 SOWAHCQ53LP3 525 aaPredicted RBP10.7□□□□□ -0.7
VPS39-201ENST00000318006 ACTBL2Q562R1 376 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 ZNF705AQ6ZN79 300 aaPredicted RBP10.7□□□□□ -0.7
VPS39-201ENST00000318006 CMIPQ8IY22 773 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 YIPF5Q969M3 257 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 PLEKHJ1Q9NW61 149 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 CBY1Q9Y3M2 126 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 NPIPA2E9PIF3 369 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 NPIPA3F8WFD2 350 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 SURF4O15260 269 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 GPX5O75715 221 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 HBE1P02100 147 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 SERPINA7P05543 415 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 ZNF888P0CJ79 500 aaPredicted RBP10.69□□□□□ -0.7
VPS39-201ENST00000318006 MAOBP27338 520 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 CARD17Q5XLA6 110 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 LPCAT3Q6P1A2 487 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 RFLNAQ6ZTI6 216 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 OR51D1Q8NGF3 324 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 CDCA4Q9BXL8 241 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 PURGQ9UJV8 347 aaKnown RBP10.69□□□□□ -0.7
VPS39-201ENST00000318006 DKKL1Q9UK85 242 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 RREB1Q92766 1687 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 WNK3Q9BYP7 1800 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 URB1O60287 2271 aaKnown RBP10.69□□□□□ -0.7
VPS39-201ENST00000318006 TRAV27A0A087WT01 109 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 STK17BO94768 372 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 SERPINE2P07093 398 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 CLDN20P56880 219 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 TEKQ02763 1124 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 RNF212Q495C1 297 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 STEAP1BQ6NZ63 245 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 SBSNQ6UWP8 590 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 RNF175Q8N4F7 328 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 PHYHIPQ92561 330 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 TAAR8Q969N4 342 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 TMEM30AQ9NV96 361 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 ETV7Q9Y603 341 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 MT-CO2P00403 227 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 GPX2P18283 190 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 TGM1P22735 817 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 NR0B1P51843 470 aaKnown RBP10.69□□□□□ -0.7
VPS39-201ENST00000318006 TRA2BP62995 288 aaKnown RBP10.69□□□□□ -0.7
VPS39-201ENST00000318006 ACY1Q03154 408 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 RPE65Q16518 533 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 RTL6Q6ICC9 239 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 OR5D14Q8NGL3 314 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 THAP3Q8WTV1 239 aaPredicted RBP10.69□□□□□ -0.7
VPS39-201ENST00000318006 BTF3L4Q96K17 158 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 SLC25A21Q9BQT8 299 aaPredicted RBP10.69□□□□□ -0.7
VPS39-201ENST00000318006 SPNS1Q9H2V7 528 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 ZNF768Q9H5H4 540 aaKnown RBP10.69□□□□□ -0.7
VPS39-201ENST00000318006 SLC6A20Q9NP91 592 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms