RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 RIMS3Q9UJD0 308 aa11.85□□□□□ -0.51
VPS28-201ENST00000292510 NOSIPQ9Y314 301 aaKnown RBP11.85□□□□□ -0.51
VPS28-201ENST00000292510 FLVCR1Q9Y5Y0 555 aa11.85□□□□□ -0.51
VPS28-201ENST00000292510 V9GYQ6 96 aa11.85□□□□□ -0.51
VPS28-201ENST00000292510 CACNA1DQ01668 2161 aa11.85□□□□□ -0.51
VPS28-201ENST00000292510 FREM1Q5H8C1 2179 aa11.85□□□□□ -0.51
VPS28-201ENST00000292510 CSMD2Q7Z408 3487 aa11.84□□□□□ -0.51
VPS28-201ENST00000292510 OR2T1O43869 369 aa11.84□□□□□ -0.51
VPS28-201ENST00000292510 FZD7O75084 574 aa11.84□□□□□ -0.51
VPS28-201ENST00000292510 OR5F1O95221 314 aa11.84□□□□□ -0.51
VPS28-201ENST00000292510 IGHV3-9P01782 118 aa11.84□□□□□ -0.51
VPS28-201ENST00000292510 OR3A2P47893 321 aa11.84□□□□□ -0.51
VPS28-201ENST00000292510 TLE4Q04727 773 aa11.84□□□□□ -0.51
VPS28-201ENST00000292510 TSC22D1Q15714 1073 aa11.84□□□□□ -0.51
VPS28-201ENST00000292510 FXNQ16595 210 aa11.84□□□□□ -0.51
VPS28-201ENST00000292510 IFI44LQ53G44 452 aa11.84□□□□□ -0.51
VPS28-201ENST00000292510 TMEM225Q6GV28 225 aa11.84□□□□□ -0.51
VPS28-201ENST00000292510 TTC33Q6PID6 262 aaPredicted RBP11.84□□□□□ -0.51
VPS28-201ENST00000292510 C5orf46Q6UWT4 87 aa11.84□□□□□ -0.51
VPS28-201ENST00000292510 CASP12Q6UXS9 341 aa11.84□□□□□ -0.51
VPS28-201ENST00000292510 BEND4Q6ZU67 534 aa11.84□□□□□ -0.51
VPS28-201ENST00000292510 C22orf34Q6ZV56 151 aa11.84□□□□□ -0.51
VPS28-201ENST00000292510 ZNF100Q8IYN0 542 aa11.84□□□□□ -0.51
VPS28-201ENST00000292510 C10orf53Q8N6V4 93 aa11.84□□□□□ -0.51
VPS28-201ENST00000292510 ZIC4Q8N9L1 334 aa11.84□□□□□ -0.51
VPS28-201ENST00000292510 TMEM255BQ8WV15 326 aa11.84□□□□□ -0.51
VPS28-201ENST00000292510 GEMIN6Q8WXD5 167 aaKnown RBP11.84□□□□□ -0.51
VPS28-201ENST00000292510 MOGAT1Q96PD6 335 aa11.84□□□□□ -0.51
VPS28-201ENST00000292510 ZNF385AQ96PM9 386 aaKnown RBP11.84□□□□□ -0.51
VPS28-201ENST00000292510 EPYCQ99645 322 aa11.84□□□□□ -0.51
VPS28-201ENST00000292510 DCAF13Q9NV06 445 aaKnown RBP11.84□□□□□ -0.51
VPS28-201ENST00000292510 KCNN3Q9UGI6 736 aa11.84□□□□□ -0.51
VPS28-201ENST00000292510 A4GNTQ9UNA3 340 aa11.84□□□□□ -0.51
VPS28-201ENST00000292510 NAV2Q8IVL1 2488 aa11.84□□□□□ -0.51
VPS28-201ENST00000292510 POLQO75417 2590 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 LRBAP50851 2863 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 SH3D21A4FU49 640 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 C16orf97H3BN30 126 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 GPR171O14626 319 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 ARPC2O15144 300 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 MRPL33O75394 65 aaKnown RBP11.83□□□□□ -0.52
VPS28-201ENST00000292510 GMNNO75496 209 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 PDE5AO76074 875 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 ADAP00813 363 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 IFNW1P05000 195 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 PEX19P40855 299 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 UGT2B15P54855 530 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 STAC2Q6ZMT1 411 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 TSEN54Q7Z6J9 526 aaKnown RBP11.83□□□□□ -0.52
VPS28-201ENST00000292510 CXorf67Q86X51 503 aaPredicted RBP11.83□□□□□ -0.52
VPS28-201ENST00000292510 GABRG1Q8N1C3 465 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 PFN4Q8NHR9 129 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 APH1AQ96BI3 265 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 MPP4Q96JB8 637 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 PRRC1Q96M27 445 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 WFIKKN1Q96NZ8 548 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 ZNF426Q9BUY5 554 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 SF3B5Q9BWJ5 86 aaKnown RBP11.83□□□□□ -0.52
VPS28-201ENST00000292510 POLR2J2Q9GZM3 115 aaKnown RBP11.83□□□□□ -0.52
VPS28-201ENST00000292510 POLR2J3Q9H1A7 115 aaKnown RBP11.83□□□□□ -0.52
VPS28-201ENST00000292510 GORASP2Q9H8Y8 452 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 TAS2R1Q9NYW7 299 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 B3GAT1Q9P2W7 334 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 RHCGQ9UBD6 479 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 MAGEL2Q9UJ55 1249 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 RPS6KA6Q9UK32 745 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 TEX15Q9BXT5 2789 aa11.83□□□□□ -0.52
VPS28-201ENST00000292510 HRNRQ86YZ3 2850 aaPredicted RBP11.82□□□□□ -0.52
VPS28-201ENST00000292510 FFAR1O14842 300 aa11.82□□□□□ -0.52
VPS28-201ENST00000292510 PIP5K1CO60331 668 aa11.82□□□□□ -0.52
VPS28-201ENST00000292510 VAMP5O95183 116 aa11.82□□□□□ -0.52
VPS28-201ENST00000292510 CH25HO95992 272 aa11.82□□□□□ -0.52
VPS28-201ENST00000292510 HPRP00739 348 aa11.82□□□□□ -0.52
VPS28-201ENST00000292510 NQO1P15559 274 aaKnown RBP11.82□□□□□ -0.52
VPS28-201ENST00000292510 KRTAP10-9P60411 292 aa11.82□□□□□ -0.52
VPS28-201ENST00000292510 LSM11P83369 360 aaKnown RBP eCLIP11.82□□□□□ -0.52
VPS28-201ENST00000292510 IL1RL1Q01638 556 aa11.82□□□□□ -0.52
VPS28-201ENST00000292510 ZNF74Q16587 644 aa11.82□□□□□ -0.52
VPS28-201ENST00000292510 Q6ZT83 130 aa11.82□□□□□ -0.52
VPS28-201ENST00000292510 CREB3L2Q70SY1 520 aa11.82□□□□□ -0.52
VPS28-201ENST00000292510 H1FNTQ75WM6 255 aaPredicted RBP11.82□□□□□ -0.52
VPS28-201ENST00000292510 EPHX4Q8IUS5 362 aa11.82□□□□□ -0.52
VPS28-201ENST00000292510 LRRC17Q8N6Y2 441 aa11.82□□□□□ -0.52
VPS28-201ENST00000292510 OR6S1Q8NH40 331 aa11.82□□□□□ -0.52
VPS28-201ENST00000292510 FAM222BQ8WU58 562 aa11.82□□□□□ -0.52
VPS28-201ENST00000292510 C14orf79Q96F83 325 aa11.82□□□□□ -0.52
VPS28-201ENST00000292510 ZC3HAV1LQ96H79 300 aaKnown RBP11.82□□□□□ -0.52
VPS28-201ENST00000292510 CLPTM1LQ96KA5 538 aa11.82□□□□□ -0.52
VPS28-201ENST00000292510 NSMCE2Q96MF7 247 aa11.82□□□□□ -0.52
VPS28-201ENST00000292510 MED18Q9BUE0 208 aa11.82□□□□□ -0.52
VPS28-201ENST00000292510 MEPEQ9NQ76 525 aaPredicted RBP11.82□□□□□ -0.52
VPS28-201ENST00000292510 SAMD4AQ9UPU9 718 aaKnown RBP11.82□□□□□ -0.52
VPS28-201ENST00000292510 RASD1Q9Y272 281 aa11.82□□□□□ -0.52
VPS28-201ENST00000292510 TESMINQ9Y4I5 508 aa11.82□□□□□ -0.52
VPS28-201ENST00000292510 ENO4A6NNW6 628 aa11.81□□□□□ -0.52
VPS28-201ENST00000292510 MS4A18H0YCH9 400 aa11.81□□□□□ -0.52
VPS28-201ENST00000292510 hCG_2039718K7EN88 272 aa11.81□□□□□ -0.52
VPS28-201ENST00000292510 LYZL6O75951 148 aa11.81□□□□□ -0.52
VPS28-201ENST00000292510 DIRAS1O95057 198 aa11.81□□□□□ -0.52
VPS28-201ENST00000292510 PRSS23O95084 383 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms