RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 ADAD1Q96M93 576 aaKnown RBP15.2■□□□□ 0.02
VPS54-201ENST00000272322 KCNK15Q9H427 330 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 KIR2DS5A0A0G2JLQ3 304 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 A0A0G2JNG1 304 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 KIR2DS3K7RE56 304 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 SMAD9O15198 467 aaKnown RBP15.2■□□□□ 0.02
VPS54-201ENST00000272322 FABP7O15540 132 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 ANKRD34CP0C6C1 535 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 CXCL3P19876 107 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 CD1CP29017 333 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 MRPS21P82921 87 aaKnown RBP15.2■□□□□ 0.02
VPS54-201ENST00000272322 FHL1Q13642 323 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 GRM7Q14831 915 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 KIR2DS5Q14953 304 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 C3orf49Q96BT1 292 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 AHCYL2Q96HN2 611 aaKnown RBP15.2■□□□□ 0.02
VPS54-201ENST00000272322 ISYNA1Q9NPH2 558 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 NCDNQ9UBB6 729 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 ATXN7L1Q9ULK2 861 aaPredicted RBP15.2■□□□□ 0.02
VPS54-201ENST00000272322 KLHDC2Q9Y2U9 406 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 PLPP2O43688 288 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 WNT1P04628 370 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 ADH7P40394 386 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 HTR2BP41595 481 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 NR0B1P51843 470 aaKnown RBP15.2■□□□□ 0.02
VPS54-201ENST00000272322 HSD17B12Q53GQ0 312 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 KIAA0895LQ68EN5 471 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 JAZF1Q86VZ6 243 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 LRRC28Q86X40 367 aaPredicted RBP15.2■□□□□ 0.02
VPS54-201ENST00000272322 LSM14AQ8ND56 463 aaKnown RBP15.2■□□□□ 0.02
VPS54-201ENST00000272322 CACNG6Q9BXT2 260 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 MED28Q9H204 178 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 SYT4Q9H2B2 425 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 WDR76Q9H967 626 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 CYSLTR2Q9NS75 346 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 KLK11Q9UBX7 282 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 PCDHGB7Q9Y5F8 929 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 FREM3P0C091 2139 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 CTNSO60931 367 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 ZFPL1O95159 310 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 SF3A2Q15428 464 aaKnown RBP15.19■□□□□ 0.02
VPS54-201ENST00000272322 PRR23CQ6ZRP0 262 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 MARCH3Q86UD3 253 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 FAM181AQ8N9Y4 354 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 DEDD2Q8WXF8 326 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 SNAPC3Q92966 411 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 ALG12Q9BV10 488 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 OR1D5P58170 312 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 GPALPP1Q8IXQ4 340 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 TOR1AIP2Q8NFQ8 470 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 OR51A4Q8NGJ6 313 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 ING3Q9NXR8 418 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 CHRNA9Q9UGM1 479 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 CACNG2Q9Y698 323 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 A0A0G2JK05 382 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 TMEM150CB9EJG8 249 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 H0YC42 278 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 PRAMEF2O60811 474 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 ARFIP1P53367 373 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 FAPQ12884 760 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 CCINQ13939 588 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 GAS6Q14393 721 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 ATOH1Q92858 354 aaPredicted RBP15.19■□□□□ 0.02
VPS54-201ENST00000272322 FOXQ1Q9C009 403 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 LMAN1LQ9HAT1 526 aa15.19■□□□□ 0.02
VPS54-201ENST00000272322 GPR179Q6PRD1 2367 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 OR2B3O76000 313 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 TACR3P29371 465 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 RPS15P62841 145 aaKnown RBP15.18■□□□□ 0.02
VPS54-201ENST00000272322 FAM69BQ5VUD6 431 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 NPEPL1Q8NDH3 523 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 MEN1O00255 615 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 SSNA1O43805 119 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 SLC19A2O60779 497 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 EPXP11678 715 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 SLC2A5P22732 501 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 GPR3P46089 330 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 RRAS2P62070 204 aaPredicted RBP15.18■□□□□ 0.02
VPS54-201ENST00000272322 CDK5R1Q15078 307 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 BCL2A1Q16548 175 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 ALG10Q5BKT4 473 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 DMKNQ6E0U4 476 aaPredicted RBP15.18■□□□□ 0.02
VPS54-201ENST00000272322 ZNF550Q7Z398 422 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 LILRB4Q8NHJ6 448 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 OR10A4Q9H209 315 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 ST6GALNAC2Q9UJ37 374 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 ANKRD34BA5PLL1 514 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 SCDO00767 359 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 TMIGD3P0DMS9 266 aaPredicted RBP15.18■□□□□ 0.02
VPS54-201ENST00000272322 MAP3K8P41279 467 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 NRG3P56975 720 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 PLA2G7Q13093 441 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 NSDHLQ15738 373 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 TMEM184AQ6ZMB5 413 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 SNX18Q96RF0 628 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 RCE1Q9Y256 329 aa15.18■□□□□ 0.02
VPS54-201ENST00000272322 KIF26BQ2KJY2 2108 aa15.17■□□□□ 0.02
VPS54-201ENST00000272322 GPLD1P80108 840 aa15.17■□□□□ 0.02
VPS54-201ENST00000272322 SNTB2Q13425 540 aaKnown RBP15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms