RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 ZNF426Q9BUY5 554 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 CHST6Q9GZX3 395 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 ZMAT3Q9HA38 289 aaKnown RBP9.78□□□□□ -0.84
USP28-201ENST00000003302 ACTR10Q9NZ32 417 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 HNRNPA1P09651 372 aaKnown RBP eCLIP9.77□□□□□ -0.84
USP28-201ENST00000003302 APEHP13798 732 aaKnown RBP9.77□□□□□ -0.84
USP28-201ENST00000003302 RBMS1P29558 406 aaKnown RBP9.77□□□□□ -0.84
USP28-201ENST00000003302 HSD17B2P37059 387 aa9.77□□□□□ -0.84
USP28-201ENST00000003302 AQP2P41181 271 aa9.77□□□□□ -0.84
USP28-201ENST00000003302 PTH2RP49190 550 aa9.77□□□□□ -0.84
USP28-201ENST00000003302 EXOSC6Q5RKV6 272 aaKnown RBP9.77□□□□□ -0.84
USP28-201ENST00000003302 TMEM65Q6PI78 240 aa9.77□□□□□ -0.84
USP28-201ENST00000003302 PRR22Q8IZ63 422 aa9.77□□□□□ -0.84
USP28-201ENST00000003302 SPATA2Q9UM82 520 aa9.77□□□□□ -0.84
USP28-201ENST00000003302 YBX2Q9Y2T7 364 aaKnown RBP9.77□□□□□ -0.84
USP28-201ENST00000003302 DMXL2Q8TDJ6 3036 aa9.77□□□□□ -0.84
USP28-201ENST00000003302 RAF1P04049 648 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 HMGN1P05114 100 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 RPS21P63220 83 aaKnown RBP9.77□□□□□ -0.85
USP28-201ENST00000003302 SIRPAP78324 504 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 ALG11Q2TAA5 492 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 LINC01590Q5TEZ4 76 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 DCAF12L2Q5VW00 463 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 SLC25A25Q6KCM7 469 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 SEZ6L2Q6UXD5 910 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 MAMSTRQ6ZN01 415 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 RANBP3LQ86VV4 465 aaPredicted RBP9.77□□□□□ -0.85
USP28-201ENST00000003302 ZSCAN1Q8NBB4 408 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 TTLQ8NG68 377 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 DVL3Q92997 716 aaPredicted RBP9.77□□□□□ -0.85
USP28-201ENST00000003302 CTHRC1Q96CG8 243 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 OR2M4Q96R27 311 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 SRA1Q9HD15 236 aaKnown RBP9.77□□□□□ -0.85
USP28-201ENST00000003302 PLRG1O43660 514 aaKnown RBP9.77□□□□□ -0.85
USP28-201ENST00000003302 ALDOBP05062 364 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 EDNRAP25101 427 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 IFNA8P32881 189 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 TALDO1P37837 337 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 C19orf57Q0VDD7 668 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 MRPL28Q13084 256 aaKnown RBP9.77□□□□□ -0.85
USP28-201ENST00000003302 GRK1Q15835 563 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 MZT2AQ6P582 158 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 OR5M1Q8NGP8 315 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 RAB7BQ96AH8 199 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 SORCS2Q96PQ0 1159 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 HRASLSQ9HDD0 168 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 MED17Q9NVC6 651 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 GLTPQ9NZD2 209 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 NCDNQ9UBB6 729 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 OR5V1Q9UGF6 321 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 SLC19A2O60779 497 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 MAS1P04201 325 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 ANOS1P23352 680 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 STOMP27105 288 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 ANXA11P50995 505 aaKnown RBP9.77□□□□□ -0.85
USP28-201ENST00000003302 PRR23CQ6ZRP0 262 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 CA13Q8N1Q1 262 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 FTMTQ8N4E7 242 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 MS4A15Q8N5U1 240 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 ZNF671Q8TAW3 534 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 HSPA12BQ96MM6 686 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 LHX6Q9UPM6 363 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 FAM186AA6NE01 2351 aa9.77□□□□□ -0.85
USP28-201ENST00000003302 SSNA1O43805 119 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 CT45A8P0DMV1 189 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 CT45A9P0DMV2 189 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 SRMP19623 302 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 H2BFSP57053 126 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 TOMM34Q15785 309 aaPredicted RBP9.76□□□□□ -0.85
USP28-201ENST00000003302 ETFDHQ16134 617 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 CT45A2Q5DJT8 189 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 GID4Q8IVV7 300 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 FAM160A2Q8N612 972 aaPredicted RBP9.76□□□□□ -0.85
USP28-201ENST00000003302 SUN5Q8TC36 379 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 HYLS1Q96M11 299 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 ANKRD19PQ9H560 264 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 ICAM5Q9UMF0 924 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 SLC22A31A6NKX4 558 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 SULT1A3P0DMM9 295 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 SULT1A4P0DMN0 295 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 SPI1P17947 270 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 C5AR1P21730 350 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 DNASE1P24855 282 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 DPP4P27487 766 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 ARHGDIBP52566 201 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 EGR4Q05215 589 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 SLC37A2Q8TED4 501 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 JAM3Q9BX67 310 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 FRRS1LQ9P0K9 344 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 RIIAD1A6NNX1 92 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 VSIG10L2P0DP72 767 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 CDK2P24941 298 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 RPL4P36578 427 aaKnown RBP9.76□□□□□ -0.85
USP28-201ENST00000003302 CCR9P51686 369 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 ENPP2Q13822 863 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 SLC35D2Q76EJ3 337 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 NDUFAF7Q7L592 441 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 UBE2Q1Q7Z7E8 422 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 STPG2Q8N412 459 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 DEFB119Q8N690 84 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms