RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	BLOC1S5-TXNDC5	H3BN57	136 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	BHLHE40	O14503	412 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	IDH3B	O43837	385 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	WBP4	O75554	376 aa	Known RBP	10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	ADRB1	P08588	477 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	CCDC159	P0C7I6	412 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	IL11	P20809	199 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	UQCRC1	P31930	480 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	PCYT1A	P49585	367 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	TNFSF10	P50591	281 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	RPS4X	P62701	263 aa	Known RBP	10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	FOXK1	P85037	733 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	TOMM20	Q15388	145 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	OCLN	Q16625	522 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	SYT14P1	Q58G82	188 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	ZNF766	Q5HY98	468 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	THSD4	Q6ZMP0	1018 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	DPY19L2P2	Q6ZN68	376 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	LSR	Q86X29	649 aa	Predicted RBP	10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	SPACA3	Q8IXA5	215 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	TCEANC	Q8N8B7	351 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	TMEM178A	Q8NBL3	297 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	ATP6V1C2	Q8NEY4	427 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	TMEM163	Q8TC26	289 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	SLC25A36	Q96CQ1	311 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	SCMH1	Q96GD3	660 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	PLEKHA8	Q96JA3	519 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	SMAD5	Q99717	465 aa	Known RBP	10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	ASPN	Q9BXN1	380 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	OR2B2	Q9GZK3	357 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	KLHL1	Q9NR64	748 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	PLCXD1	Q9NUJ7	323 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	SCN3B	Q9NY72	215 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	B4GALT7	Q9UBV7	327 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	IL20RA	Q9UHF4	553 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	SCOC	Q9UIL1	159 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	BLOC1S6	Q9UL45	172 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	RPH3A	Q9Y2J0	694 aa	Predicted RBP	10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	SLC6A5	Q9Y345	797 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	ACACA	Q13085	2346 aa		10.62	□□□□□ -0.71
CLN6-223	ENST00000637823	OR2M5	A3KFT3	312 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	FTCDNL1	E5RQL4	147 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	LINC01387	J3KSC0	135 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	SLC1A7	O00341	560 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	SURF4	O15260	269 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	TLX2	O43763	284 aa	Predicted RBP	10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	PRKY	O43930	277 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	FZD7	O75084	574 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	RFPL3S	P0C7P2	107 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	PEPD	P12955	493 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	TCEA1	P23193	301 aa	Known RBP	10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	CRHBP	P24387	322 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	GDF1	P27539	372 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	FMO3	P31513	532 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	IDUA	P35475	653 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	RPL4	P36578	427 aa	Known RBP	10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	B3GALT5-AS1	P59052	145 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	RAC1	P63000	192 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	PMS2P3	Q13401	168 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	SGCB	Q16585	318 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	HYAL4	Q2M3T9	481 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	TMEM201	Q5SNT2	666 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	RAET1L	Q5VY80	246 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	MEDAG	Q5VYS4	303 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	GALNTL5	Q7Z4T8	443 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	NANOGNB	Q7Z5D8	188 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	CCDC103	Q8IW40	242 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	SCAI	Q8N9R8	606 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	FAM83F	Q8NEG4	500 aa	Predicted RBP	10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	BPIFB6	Q8NFQ5	453 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	TSPAN14	Q8NG11	270 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	OR5M1	Q8NGP8	315 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	OR5J2	Q8NH18	312 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	OR14L1P	Q8NHC6	308 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	APH1B	Q8WW43	257 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	ARL5B	Q96KC2	179 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	IL4I1	Q96RQ9	567 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	GPX7	Q96SL4	187 aa	Predicted RBP	10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	TAPBPL	Q9BX59	468 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	HES7	Q9BYE0	225 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	QPCTL	Q9NXS2	382 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	MRPL39	Q9NYK5	338 aa	Known RBP	10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	AASS	Q9UDR5	926 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	TRAPPC4	Q9Y296	219 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	TPRKB	Q9Y3C4	175 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	HDGFL3	Q9Y3E1	203 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	CORIN	Q9Y5Q5	1042 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	APC2	O95996	2303 aa		10.61	□□□□□ -0.71
CLN6-223	ENST00000637823	MED12	Q93074	2177 aa		10.6	□□□□□ -0.71
CLN6-223	ENST00000637823	LIPT2	A6NK58	231 aa		10.6	□□□□□ -0.71
CLN6-223	ENST00000637823	GJE1	A6NN92	205 aa		10.6	□□□□□ -0.71
CLN6-223	ENST00000637823	MCIDAS	D6RGH6	385 aa		10.6	□□□□□ -0.71
CLN6-223	ENST00000637823		H3BML4	177 aa		10.6	□□□□□ -0.71
CLN6-223	ENST00000637823		M0R129	80 aa		10.6	□□□□□ -0.71
CLN6-223	ENST00000637823	PLPP3	O14495	311 aa		10.6	□□□□□ -0.71
CLN6-223	ENST00000637823	IMPA2	O14732	288 aa		10.6	□□□□□ -0.71
CLN6-223	ENST00000637823	ARPC3	O15145	178 aa		10.6	□□□□□ -0.71
CLN6-223	ENST00000637823	FAM20B	O75063	409 aa		10.6	□□□□□ -0.71
CLN6-223	ENST00000637823	TRAPPC6A	O75865	159 aa		10.6	□□□□□ -0.71
CLN6-223	ENST00000637823	SMNDC1	O75940	238 aa	Known RBP eCLIP	10.6	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms