RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 A0A096LPI6 279 aa16.16■□□□□ 0.18
CLN3-241ENST00000635861 CDHR4A6H8M9 788 aa16.16■□□□□ 0.18
CLN3-241ENST00000635861 ELOA3DA6NLF2 546 aaPredicted RBP16.16■□□□□ 0.18
CLN3-241ENST00000635861 M0R1B8 84 aa16.16■□□□□ 0.18
CLN3-241ENST00000635861 RFXANKO14593 260 aa16.16■□□□□ 0.18
CLN3-241ENST00000635861 WNT11O96014 354 aa16.16■□□□□ 0.18
CLN3-241ENST00000635861 IFNA2P01563 188 aa16.16■□□□□ 0.18
CLN3-241ENST00000635861 CSF3P09919 207 aa16.16■□□□□ 0.18
CLN3-241ENST00000635861 IDO1P14902 403 aa16.16■□□□□ 0.18
CLN3-241ENST00000635861 CCNA2P20248 432 aa16.16■□□□□ 0.18
CLN3-241ENST00000635861 CXCR1P25024 350 aa16.16■□□□□ 0.18
CLN3-241ENST00000635861 IL12AP29459 219 aa16.16■□□□□ 0.18
CLN3-241ENST00000635861 CDKN2CP42773 168 aa16.16■□□□□ 0.18
CLN3-241ENST00000635861 FABP6P51161 128 aa16.16■□□□□ 0.18
CLN3-241ENST00000635861 CRISP3P54108 245 aa16.16■□□□□ 0.18
CLN3-241ENST00000635861 IRX1P78414 480 aaPredicted RBP16.16■□□□□ 0.18
CLN3-241ENST00000635861 CHRNB3Q05901 458 aa16.16■□□□□ 0.18
CLN3-241ENST00000635861 RAB35Q15286 201 aa16.16■□□□□ 0.18
CLN3-241ENST00000635861 ELOA3BQ3SY89 546 aa16.16■□□□□ 0.18
CLN3-241ENST00000635861 OTUD3Q5T2D3 398 aaPredicted RBP16.16■□□□□ 0.18
CLN3-241ENST00000635861 HHATQ5VTY9 493 aa16.16■□□□□ 0.18
CLN3-241ENST00000635861 MSANTD1Q6ZTZ1 278 aa16.16■□□□□ 0.18
CLN3-241ENST00000635861 HMGN2P46Q86SG4 172 aa16.16■□□□□ 0.18
CLN3-241ENST00000635861 C10orf67Q8IYJ2 551 aa16.16■□□□□ 0.18
CLN3-241ENST00000635861 WDR31Q8NA23 367 aa16.16■□□□□ 0.18
CLN3-241ENST00000635861 ELOA3Q8NG57 546 aa16.16■□□□□ 0.18
CLN3-241ENST00000635861 SLC7A10Q9NS82 523 aa16.16■□□□□ 0.18
CLN3-241ENST00000635861 OR6C65A6NJZ3 312 aa16.15■□□□□ 0.18
CLN3-241ENST00000635861 AQP7P3A6NL99 342 aa16.15■□□□□ 0.18
CLN3-241ENST00000635861 NDUFAB1O14561 156 aa16.15■□□□□ 0.18
CLN3-241ENST00000635861 VAMP5O95183 116 aa16.15■□□□□ 0.18
CLN3-241ENST00000635861 ZCCHC18P0CG32 403 aa16.15■□□□□ 0.18
CLN3-241ENST00000635861 NME5P56597 212 aa16.15■□□□□ 0.18
CLN3-241ENST00000635861 PRPS1P60891 318 aa16.15■□□□□ 0.18
CLN3-241ENST00000635861 COPZ1P61923 177 aa16.15■□□□□ 0.18
CLN3-241ENST00000635861 LOXL1Q08397 574 aaPredicted RBP16.15■□□□□ 0.18
CLN3-241ENST00000635861 PDCD4Q53EL6 469 aaKnown RBP16.15■□□□□ 0.18
CLN3-241ENST00000635861 RNF220Q5VTB9 566 aa16.15■□□□□ 0.18
CLN3-241ENST00000635861 WBP2NLQ6ICG8 309 aa16.15■□□□□ 0.18
CLN3-241ENST00000635861 KLHL24Q6TFL4 600 aa16.15■□□□□ 0.18
CLN3-241ENST00000635861 DNAJA3Q96EY1 480 aa16.15■□□□□ 0.18
CLN3-241ENST00000635861 ARMC7Q9H6L4 198 aa16.15■□□□□ 0.18
CLN3-241ENST00000635861 PMF1-BGLAPU3KQ54 211 aa16.15■□□□□ 0.18
CLN3-241ENST00000635861 IGHV4-30-2A0A087WSY4 118 aa16.14■□□□□ 0.17
CLN3-241ENST00000635861 LIPT2A6NK58 231 aa16.14■□□□□ 0.17
CLN3-241ENST00000635861 A8MV72 311 aaPredicted RBP16.14■□□□□ 0.17
CLN3-241ENST00000635861 SNNO75324 88 aaPredicted RBP16.14■□□□□ 0.17
CLN3-241ENST00000635861 APOBEC3AP31941 199 aaPredicted RBP16.14■□□□□ 0.17
CLN3-241ENST00000635861 FOXG1P55316 489 aaPredicted RBP16.14■□□□□ 0.17
CLN3-241ENST00000635861 WDR4P57081 412 aaKnown RBP16.14■□□□□ 0.17
CLN3-241ENST00000635861 SPOCK1Q08629 439 aa16.14■□□□□ 0.17
CLN3-241ENST00000635861 COX20Q5RI15 118 aa16.14■□□□□ 0.17
CLN3-241ENST00000635861 TSPO2Q5TGU0 170 aa16.14■□□□□ 0.17
CLN3-241ENST00000635861 B3GLCTQ6Y288 498 aa16.14■□□□□ 0.17
CLN3-241ENST00000635861 OR9K2Q8NGE7 335 aa16.14■□□□□ 0.17
CLN3-241ENST00000635861 OR52P1PQ8NH57 321 aa16.14■□□□□ 0.17
CLN3-241ENST00000635861 ZNF317Q96PQ6 595 aaPredicted RBP16.14■□□□□ 0.17
CLN3-241ENST00000635861 PAIP2Q9BPZ3 127 aaKnown RBP16.14■□□□□ 0.17
CLN3-241ENST00000635861 TAPBPLQ9BX59 468 aa16.14■□□□□ 0.17
CLN3-241ENST00000635861 CACYBPQ9HB71 228 aaKnown RBP16.14■□□□□ 0.17
CLN3-241ENST00000635861 MOV10Q9HCE1 1003 aaKnown RBP16.14■□□□□ 0.17
CLN3-241ENST00000635861 YAE1D1Q9NRH1 226 aa16.14■□□□□ 0.17
CLN3-241ENST00000635861 A0A096LNT2 108 aa16.13■□□□□ 0.17
CLN3-241ENST00000635861 A0A1W2PR80 420 aa16.13■□□□□ 0.17
CLN3-241ENST00000635861 ZC3H12DA2A288 527 aaKnown RBP16.13■□□□□ 0.17
CLN3-241ENST00000635861 TMEM247A6NEH6 219 aa16.13■□□□□ 0.17
CLN3-241ENST00000635861 A8MVM7 634 aa16.13■□□□□ 0.17
CLN3-241ENST00000635861 SLC22A3O75751 556 aa16.13■□□□□ 0.17
CLN3-241ENST00000635861 C1QCP02747 245 aa16.13■□□□□ 0.17
CLN3-241ENST00000635861 GSNP06396 782 aa16.13■□□□□ 0.17
CLN3-241ENST00000635861 EPHA3P29320 983 aa16.13■□□□□ 0.17
CLN3-241ENST00000635861 CEACAM7Q14002 265 aa16.13■□□□□ 0.17
CLN3-241ENST00000635861 LARS2Q15031 903 aaKnown RBP16.13■□□□□ 0.17
CLN3-241ENST00000635861 ATG16L1Q676U5 607 aa16.13■□□□□ 0.17
CLN3-241ENST00000635861 ZNF836Q6ZNA1 936 aa16.13■□□□□ 0.17
CLN3-241ENST00000635861 AAED1Q7RTV5 226 aa16.13■□□□□ 0.17
CLN3-241ENST00000635861 ANKRD42Q8N9B4 389 aa16.13■□□□□ 0.17
CLN3-241ENST00000635861 PROX1Q92786 737 aa16.13■□□□□ 0.17
CLN3-241ENST00000635861 SLC35B4Q969S0 331 aa16.13■□□□□ 0.17
CLN3-241ENST00000635861 MAELQ96JY0 434 aaKnown RBP16.13■□□□□ 0.17
CLN3-241ENST00000635861 TNFRSF13CQ96RJ3 184 aa16.13■□□□□ 0.17
CLN3-241ENST00000635861 RMND5AQ9H871 391 aa16.13■□□□□ 0.17
CLN3-241ENST00000635861 TMEM160Q9NX00 188 aa16.13■□□□□ 0.17
CLN3-241ENST00000635861 NKIRAS1Q9NYS0 192 aa16.13■□□□□ 0.17
CLN3-241ENST00000635861 ZIM2Q9NZV7 527 aa16.13■□□□□ 0.17
CLN3-241ENST00000635861 ATP23Q9Y6H3 246 aa16.13■□□□□ 0.17
CLN3-241ENST00000635861 CUBNO60494 3623 aa16.13■□□□□ 0.17
CLN3-241ENST00000635861 ANP32DO95626 131 aa16.12■□□□□ 0.17
CLN3-241ENST00000635861 ACAA2P42765 397 aaKnown RBP16.12■□□□□ 0.17
CLN3-241ENST00000635861 MVDP53602 400 aa16.12■□□□□ 0.17
CLN3-241ENST00000635861 DSTNP60981 165 aa16.12■□□□□ 0.17
CLN3-241ENST00000635861 VLDLRP98155 873 aa16.12■□□□□ 0.17
CLN3-241ENST00000635861 OR7A5Q15622 319 aa16.12■□□□□ 0.17
CLN3-241ENST00000635861 MAPK11Q15759 364 aa16.12■□□□□ 0.17
CLN3-241ENST00000635861 CHRFAM7AQ494W8 412 aa16.12■□□□□ 0.17
CLN3-241ENST00000635861 MALRD1Q5VYJ5 2156 aa16.12■□□□□ 0.17
CLN3-241ENST00000635861 TMEM225Q6GV28 225 aa16.12■□□□□ 0.17
CLN3-241ENST00000635861 HMBOX1Q6NT76 420 aa16.12■□□□□ 0.17
CLN3-241ENST00000635861 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.12■□□□□ 0.177e-9■■□□□ 13.5
CLN3-241ENST00000635861 TMEM99Q8N816 258 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms