RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 LCORQ96JN0 433 aaPredicted RBP9.7□□□□□ -0.86
CUX1-221ENST00000622516 PRO3102Q9H379 93 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 EPHA6Q9UF33 1036 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 COLQQ9Y215 455 aaPredicted RBP9.7□□□□□ -0.86
CUX1-221ENST00000622516 NCOR1O75376 2440 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 EFCAB7A8K855 629 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 H3BSH0 61 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 ZNF264O43296 627 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 PTTG1O95997 202 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 IFNGP01579 166 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 APOA1P02647 267 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 MT-ND5P03915 603 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 CSF3P09919 207 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 GLB1P16278 677 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 FBLP22087 321 aaKnown RBP9.7□□□□□ -0.86
CUX1-221ENST00000622516 RPS5P46782 204 aaKnown RBP9.7□□□□□ -0.86
CUX1-221ENST00000622516 DHPSP49366 369 aaPredicted RBP9.7□□□□□ -0.86
CUX1-221ENST00000622516 EGR4Q05215 589 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 LTBQ06643 244 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 SKP2Q13309 424 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.7□□□□□ -0.864e-6■■□□□ 11.4
CUX1-221ENST00000622516 ARHGAP11AQ6P4F7 1023 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 GLCCI1Q86VQ1 547 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 ZNF511Q8NB15 262 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 ADAMTS18Q8TE60 1221 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 GHSRQ92847 366 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 ADIPOR1Q96A54 375 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 ITPKCQ96DU7 683 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 FOXN4Q96NZ1 517 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 VN1R1Q9GZP7 353 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 RPRD1BQ9NQG5 326 aaKnown RBP9.7□□□□□ -0.86
CUX1-221ENST00000622516 WNT16Q9UBV4 365 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 K7ESF4 209 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 SCO2O43819 266 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 GPANK1O95872 356 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 PAHP00439 452 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 IGKV3-11P04433 115 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 SLC2A2P11168 524 aaPredicted RBP9.69□□□□□ -0.86
CUX1-221ENST00000622516 TACR3P29371 465 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 CDKN2AP42771 156 aaKnown RBP9.69□□□□□ -0.86
CUX1-221ENST00000622516 PPICP45877 212 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 IL18Q14116 193 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 C6orf183Q5T699 404 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 VASH1Q7L8A9 365 aaPredicted RBP9.69□□□□□ -0.86
CUX1-221ENST00000622516 OR2I1PQ8NGU4 316 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 CEP76Q8TAP6 659 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 CCDC74AQ96AQ1 378 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 SHDQ96IW2 340 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 PDCD1LG2Q9BQ51 273 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 CCDC32Q9BV29 185 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 CHRDQ9H2X0 955 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 SRA1Q9HD15 236 aaKnown RBP9.69□□□□□ -0.86
CUX1-221ENST00000622516 NANSQ9NR45 359 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 COPS3Q9UNS2 423 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 IGKV3D-11A0A0A0MRZ8 115 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 A8MV72 311 aaPredicted RBP9.69□□□□□ -0.86
CUX1-221ENST00000622516 GDF9O60383 454 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 RGS9O75916 674 aaPredicted RBP9.69□□□□□ -0.86
CUX1-221ENST00000622516 TIAF1O95411 115 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 IFI6P09912 130 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 PSMD4P55036 377 aaKnown RBP9.69□□□□□ -0.86
CUX1-221ENST00000622516 ZNF117Q03924 483 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 SELENBP1Q13228 472 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 SHBQ15464 509 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 SDK2Q58EX2 2172 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 LEG1Q6P5S2 330 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 ZNF574Q6ZN55 896 aaPredicted RBP9.69□□□□□ -0.86
CUX1-221ENST00000622516 NPEPL1Q8NDH3 523 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 ABHD4Q8TB40 342 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 ZNF578Q96N58 590 aaPredicted RBP9.69□□□□□ -0.86
CUX1-221ENST00000622516 SLC46A1Q96NT5 459 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 CDX2Q99626 313 aaPredicted RBP9.69□□□□□ -0.86
CUX1-221ENST00000622516 MED18Q9BUE0 208 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 SERTAD3Q9UJW9 196 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 GNG8Q9UK08 70 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 POU2F3Q9UKI9 436 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 ZNF337Q9Y3M9 751 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 SIT1Q9Y3P8 196 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 A0A0B4J203 849 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 BLACEA4D250 179 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 DCTN6O00399 190 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 OR7A10O76100 309 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 IL33O95760 270 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 PDGFBP01127 241 aaPredicted RBP9.69□□□□□ -0.86
CUX1-221ENST00000622516 IL12BP29460 328 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 GRK6P43250 576 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 ACSM1Q08AH1 577 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 EBPQ15125 230 aaKnown RBP9.69□□□□□ -0.86
CUX1-221ENST00000622516 PON3Q15166 354 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 FNDC7Q5VTL7 733 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 HLA-DQA1Q5Y7H0 255 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 WBP2NLQ6ICG8 309 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 D2HGDHQ8N465 521 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 ZNF527Q8NB42 609 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 SNX33Q8WV41 574 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 DNASE2BQ8WZ79 361 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 AP3S1Q92572 193 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 SLC25A36Q96CQ1 311 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 WDFY2Q96P53 400 aa9.69□□□□□ -0.86
CUX1-221ENST00000622516 ACOXLQ9NUZ1 547 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms