RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 IGFBP2P18065 325 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 CALB2P22676 271 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 HTR3AP46098 478 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 NCALDP61601 193 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 LGALS3BPQ08380 585 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 ABLIM2Q6H8Q1 611 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 LINC00114Q6XXX2 140 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 SLC30A8Q8IWU4 369 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 PFN4Q8NHR9 129 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 SLC25A43Q8WUT9 341 aaPredicted RBP11.99□□□□□ -0.49
LINC00540-202ENST00000616974 PROX1Q92786 737 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 SLC35B4Q969S0 331 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 DDIT4LQ96D03 193 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 TRIM2Q9C040 744 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 MAN2C1Q9NTJ4 1040 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 RPS6KB2Q9UBS0 482 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 ZANQ9Y493 2812 aa11.99□□□□□ -0.49
LINC00540-202ENST00000616974 A8MXE2 369 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 CYTIPO60759 359 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 SS18L1O75177 396 aaPredicted RBP11.98□□□□□ -0.49
LINC00540-202ENST00000616974 PRKD3O94806 890 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 PMS2P2O95744 297 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 PLGP00747 810 aaPredicted RBP11.98□□□□□ -0.49
LINC00540-202ENST00000616974 MT-ND1P03886 318 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 HLA-DOBP13765 273 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 HSD17B1P14061 328 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 UGT2B15P54855 530 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 CBX1P83916 185 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 VLDLRP98155 873 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 RASGEF1BQ0VAM2 473 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 IQCCQ4KMZ1 466 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 ANKRD34AQ69YU3 496 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 ULK3Q6PHR2 472 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 C6orf89Q6UWU4 347 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 RANBP3LQ86VV4 465 aaPredicted RBP11.98□□□□□ -0.49
LINC00540-202ENST00000616974 LINC01560Q8TB33 94 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 ZNF385AQ96PM9 386 aaKnown RBP11.98□□□□□ -0.49
LINC00540-202ENST00000616974 SFXN3Q9BWM7 321 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 PRSS50Q9UI38 385 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 HDGFL3Q9Y3E1 203 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 ITPR3Q14573 2671 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 GJE1A6NN92 205 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 hCG_2039718K7EN88 272 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 PRSS23O95084 383 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 HPRP00739 348 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 OPRM1P35372 400 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 IDUAP35475 653 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 ZNF295-AS1Q8N0V1 137 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 SLC41A3Q96GZ6 507 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 GMPPAQ96IJ6 420 aaPredicted RBP11.98□□□□□ -0.49
LINC00540-202ENST00000616974 TMEM27Q9HBJ8 222 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 DCAF13Q9NV06 445 aaKnown RBP11.98□□□□□ -0.49
LINC00540-202ENST00000616974 STOML1Q9UBI4 398 aa11.98□□□□□ -0.49
LINC00540-202ENST00000616974 KLF2Q9Y5W3 355 aaPredicted RBP11.98□□□□□ -0.49
LINC00540-202ENST00000616974 ARID1AO14497 2285 aa11.97□□□□□ -0.49
LINC00540-202ENST00000616974 M0R082 166 aa11.97□□□□□ -0.49
LINC00540-202ENST00000616974 PNMTP11086 282 aa11.97□□□□□ -0.49
LINC00540-202ENST00000616974 KRTAP10-9P60411 292 aa11.97□□□□□ -0.49
LINC00540-202ENST00000616974 OTUD3Q5T2D3 398 aaPredicted RBP11.97□□□□□ -0.49
LINC00540-202ENST00000616974 TBPL2Q6SJ96 375 aa11.97□□□□□ -0.49
LINC00540-202ENST00000616974 C16orf89Q6UX73 402 aa11.97□□□□□ -0.49
LINC00540-202ENST00000616974 GPAT4Q86UL3 456 aa11.97□□□□□ -0.49
LINC00540-202ENST00000616974 ZIC4Q8N9L1 334 aa11.97□□□□□ -0.49
LINC00540-202ENST00000616974 ACBD4Q8NC06 268 aa11.97□□□□□ -0.49
LINC00540-202ENST00000616974 ZNF417Q8TAU3 575 aa11.97□□□□□ -0.49
LINC00540-202ENST00000616974 ZNF587Q96SQ5 575 aaPredicted RBP11.97□□□□□ -0.49
LINC00540-202ENST00000616974 B3GAT1Q9P2W7 334 aa11.97□□□□□ -0.49
LINC00540-202ENST00000616974 BAG5Q9UL15 447 aa11.97□□□□□ -0.49
LINC00540-202ENST00000616974 USF3Q68DE3 2245 aa11.97□□□□□ -0.49
LINC00540-202ENST00000616974 CHP2O43745 196 aa11.96□□□□□ -0.49
LINC00540-202ENST00000616974 GRPRP30550 384 aa11.96□□□□□ -0.49
LINC00540-202ENST00000616974 ZSWIM7Q19AV6 140 aa11.96□□□□□ -0.49
LINC00540-202ENST00000616974 SLC25A35Q3KQZ1 300 aa11.96□□□□□ -0.49
LINC00540-202ENST00000616974 SAMD4BQ5PRF9 694 aaKnown RBP11.96□□□□□ -0.49
LINC00540-202ENST00000616974 PDSS1Q5T2R2 415 aa11.96□□□□□ -0.49
LINC00540-202ENST00000616974 MEX3BQ6ZN04 569 aaKnown RBP11.96□□□□□ -0.49
LINC00540-202ENST00000616974 FKBP9P1Q75LS8 142 aa11.96□□□□□ -0.49
LINC00540-202ENST00000616974 BHLHE22Q8NFJ8 381 aaPredicted RBP11.96□□□□□ -0.49
LINC00540-202ENST00000616974 DNAJA4Q8WW22 397 aaPredicted RBP11.96□□□□□ -0.49
LINC00540-202ENST00000616974 C7orf34Q96L11 122 aa11.96□□□□□ -0.49
LINC00540-202ENST00000616974 THTPAQ9BU02 230 aa11.96□□□□□ -0.49
LINC00540-202ENST00000616974 ZNF426Q9BUY5 554 aa11.96□□□□□ -0.49
LINC00540-202ENST00000616974 RBM24Q9BX46 236 aaKnown RBP11.96□□□□□ -0.49
LINC00540-202ENST00000616974 ENKD1Q9H0I2 346 aa11.96□□□□□ -0.49
LINC00540-202ENST00000616974 RIMS3Q9UJD0 308 aa11.96□□□□□ -0.49
LINC00540-202ENST00000616974 SLC9A8Q9Y2E8 581 aa11.96□□□□□ -0.49
LINC00540-202ENST00000616974 SPIN1Q9Y657 262 aaPredicted RBP11.96□□□□□ -0.49
LINC00540-202ENST00000616974 TRAPPC13A5PLN9 417 aa11.96□□□□□ -0.5
LINC00540-202ENST00000616974 FMO6PO60774 539 aa11.96□□□□□ -0.5
LINC00540-202ENST00000616974 BGLAPP02818 100 aa11.96□□□□□ -0.5
LINC00540-202ENST00000616974 YES1P07947 543 aa11.96□□□□□ -0.5
LINC00540-202ENST00000616974 FCGR2AP12318 317 aa11.96□□□□□ -0.5
LINC00540-202ENST00000616974 ASCL1P50553 236 aa11.96□□□□□ -0.5
LINC00540-202ENST00000616974 TAS2R41P59536 307 aa11.96□□□□□ -0.5
LINC00540-202ENST00000616974 CSNK2A1P68400 391 aaPredicted RBP11.96□□□□□ -0.5
LINC00540-202ENST00000616974 SLC17A1Q14916 467 aa11.96□□□□□ -0.5
LINC00540-202ENST00000616974 SF3B4Q15427 424 aaKnown RBP eCLIP11.96□□□□□ -0.5
LINC00540-202ENST00000616974 OR2A2Q6IF42 318 aa11.96□□□□□ -0.5
LINC00540-202ENST00000616974 ZNF613Q6PF04 617 aa11.96□□□□□ -0.5
LINC00540-202ENST00000616974 TFAP2EQ6VUC0 442 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms