RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 ZNF382Q96SR6 550 aa9.45□□□□□ -0.9
VPS39-214ENST00000614932 LINC00597Q9H2U6 94 aa9.45□□□□□ -0.9
VPS39-214ENST00000614932 TMEM185BQ9H7F4 350 aa9.45□□□□□ -0.9
VPS39-214ENST00000614932 IL26Q9NPH9 171 aa9.45□□□□□ -0.9
VPS39-214ENST00000614932 CRLS1Q9UJA2 301 aa9.45□□□□□ -0.9
VPS39-214ENST00000614932 LSM7Q9UK45 103 aaKnown RBP9.45□□□□□ -0.9
VPS39-214ENST00000614932 TBX21Q9UL17 535 aa9.45□□□□□ -0.9
VPS39-214ENST00000614932 hCG_1809904A0A1W2PP81 198 aa9.45□□□□□ -0.9
VPS39-214ENST00000614932 A0A1W2PR64 198 aa9.45□□□□□ -0.9
VPS39-214ENST00000614932 A0A1W2PRV1 198 aa9.45□□□□□ -0.9
VPS39-214ENST00000614932 NPIPB15A6NHN6 443 aaPredicted RBP9.45□□□□□ -0.9
VPS39-214ENST00000614932 FGF16O43320 207 aa9.45□□□□□ -0.9
VPS39-214ENST00000614932 SH3BGRLO75368 114 aa9.45□□□□□ -0.9
VPS39-214ENST00000614932 CLTBP09497 229 aa9.45□□□□□ -0.9
VPS39-214ENST00000614932 S100A3P33764 101 aa9.45□□□□□ -0.9
VPS39-214ENST00000614932 ERVPABLB-1P60509 514 aa9.45□□□□□ -0.9
VPS39-214ENST00000614932 RBX1P62877 108 aa9.45□□□□□ -0.9
VPS39-214ENST00000614932 SORDQ00796 357 aa9.45□□□□□ -0.9
VPS39-214ENST00000614932 KIAA0141Q14154 515 aaPredicted RBP9.45□□□□□ -0.9
VPS39-214ENST00000614932 OCLNQ16625 522 aa9.45□□□□□ -0.9
VPS39-214ENST00000614932 OR10K2Q6IF99 312 aa9.45□□□□□ -0.9
VPS39-214ENST00000614932 CEACAM20Q6UY09 585 aa9.45□□□□□ -0.9
VPS39-214ENST00000614932 OR4A4PQ8NGN8 299 aa9.45□□□□□ -0.9
VPS39-214ENST00000614932 ZNF689Q96CS4 500 aaPredicted RBP9.45□□□□□ -0.9
VPS39-214ENST00000614932 CPNE2Q96FN4 548 aaPredicted RBP9.45□□□□□ -0.9
VPS39-214ENST00000614932 ZNF75AQ96N20 296 aa9.45□□□□□ -0.9
VPS39-214ENST00000614932 DOHHQ9BU89 302 aa9.45□□□□□ -0.9
VPS39-214ENST00000614932 CFHR5Q9BXR6 569 aa9.45□□□□□ -0.9
VPS39-214ENST00000614932 GAL3ST2Q9H3Q3 398 aa9.45□□□□□ -0.9
VPS39-214ENST00000614932 RPS10P5Q9NQ39 176 aa9.45□□□□□ -0.9
VPS39-214ENST00000614932 GRHPRQ9UBQ7 328 aa9.45□□□□□ -0.9
VPS39-214ENST00000614932 UBE2QL1A1L167 161 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 NAP1L6A6NFF2 107 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 B4E171 279 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 SEC14L6B5MCN3 397 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 LEFTY2O00292 366 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 ETFAP13804 333 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 S1PR1P21453 382 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 NDUFS1P28331 727 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 ADH6P28332 368 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 DMRTA1Q5VZB9 504 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 ASTLQ6HA08 431 aaPredicted RBP9.44□□□□□ -0.9
VPS39-214ENST00000614932 KIAA1211LQ6NV74 962 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 DPPA4Q7L190 304 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 ZNF546Q86UE3 836 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 NR2C2APQ86WQ0 139 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 TCEAL8Q8IYN2 117 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 NKAPQ8N5F7 415 aaKnown RBP9.44□□□□□ -0.9
VPS39-214ENST00000614932 SLC24A4Q8NFF2 622 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 OR51S1Q8NGJ8 323 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 OR8J1Q8NGP2 316 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 NEK7Q8TDX7 302 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 LCN9Q8WX39 176 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 ING5Q8WYH8 240 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 GAL3ST3Q96A11 431 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 MRGPRX4Q96LA9 322 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 ZNF471Q9BX82 626 aaPredicted RBP9.44□□□□□ -0.9
VPS39-214ENST00000614932 WDR13Q9H1Z4 485 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 PPIL1Q9Y3C6 166 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 PCDHB1Q9Y5F3 818 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 ANAPC1Q9H1A4 1944 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 CCDC163A0A0D9SF12 145 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 A0A1W2PPH5 198 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 SULT2B1O00204 365 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 GAPDHSO14556 408 aaPredicted RBP9.44□□□□□ -0.9
VPS39-214ENST00000614932 BCL2L11O43521 198 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 FMO6PO60774 539 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 ZNF821O75541 412 aaPredicted RBP9.44□□□□□ -0.9
VPS39-214ENST00000614932 PLGP00747 810 aaPredicted RBP9.44□□□□□ -0.9
VPS39-214ENST00000614932 SERPINA5P05154 406 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 AGTR1P30556 359 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 GALNSP34059 522 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 THBS2P35442 1172 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 FEN1P39748 380 aaKnown RBP9.44□□□□□ -0.9
VPS39-214ENST00000614932 CACNG1Q06432 222 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 VEZF1Q14119 521 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 HEPACAMQ14CZ8 416 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 TGIF1Q15583 401 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 JMJD6Q6NYC1 403 aaPredicted RBP9.44□□□□□ -0.9
VPS39-214ENST00000614932 Q6ZNB5 142 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 Q6ZVU0 165 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 BCDIN3DQ7Z5W3 292 aaKnown RBP9.44□□□□□ -0.9
VPS39-214ENST00000614932 KCNRGQ8N5I3 272 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 DCAF4L2Q8NA75 395 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 AQP11Q8NBQ7 271 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 OR5R1Q8NH85 324 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 CYB5D2Q8WUJ1 264 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 HRASLSQ9HDD0 168 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 PARD6AQ9NPB6 346 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 MEPEQ9NQ76 525 aaPredicted RBP9.44□□□□□ -0.9
VPS39-214ENST00000614932 MMP26Q9NRE1 261 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 MAN2C1Q9NTJ4 1040 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 TESQ9UGI8 421 aaKnown RBP9.44□□□□□ -0.9
VPS39-214ENST00000614932 NDOR1Q9UHB4 597 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 RASD1Q9Y272 281 aa9.44□□□□□ -0.9
VPS39-214ENST00000614932 COL4A6Q14031 1691 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 CD8B2A6NJW9 211 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 HEPACAM2A8MVW5 462 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 GSTZ1O43708 216 aaPredicted RBP9.43□□□□□ -0.9
VPS39-214ENST00000614932 CD8BP10966 210 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms