RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 TAPBPLQ9BX59 468 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 DGCR6LQ9BY27 220 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 TIGARQ9NQ88 270 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 NANSQ9NR45 359 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 PAQR5Q9NXK6 330 aaPredicted RBP12.88□□□□□ -0.35
UPF1-211ENST00000600868 ALKBH4Q9NXW9 302 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 TNFRSF10DQ9UBN6 386 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 ZNF229Q9UJW7 825 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 CAMK2AQ9UQM7 478 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 CORINQ9Y5Q5 1042 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 MAGED1Q9Y5V3 778 aaPredicted RBP12.88□□□□□ -0.35
UPF1-211ENST00000600868 EIF1BO60739 113 aaKnown RBP12.87□□□□□ -0.35
UPF1-211ENST00000600868 ADAP00813 363 aa12.87□□□□□ -0.35
UPF1-211ENST00000600868 ASAH2BP0C7U1 165 aa12.87□□□□□ -0.35
UPF1-211ENST00000600868 FUT1P19526 365 aa12.87□□□□□ -0.35
UPF1-211ENST00000600868 PRKACGP22612 351 aa12.87□□□□□ -0.35
UPF1-211ENST00000600868 FPR3P25089 353 aa12.87□□□□□ -0.35
UPF1-211ENST00000600868 GPR4P46093 362 aa12.87□□□□□ -0.35
UPF1-211ENST00000600868 EIF1AXP47813 144 aaKnown RBP12.87□□□□□ -0.35
UPF1-211ENST00000600868 GSSP48637 474 aa12.87□□□□□ -0.35
UPF1-211ENST00000600868 SLC9A3P48764 834 aa12.87□□□□□ -0.35
UPF1-211ENST00000600868 AGFG1P52594 562 aaKnown RBP12.87□□□□□ -0.35
UPF1-211ENST00000600868 OR2B6P58173 313 aa12.87□□□□□ -0.35
UPF1-211ENST00000600868 H3F3AP84243 136 aa12.87□□□□□ -0.35
UPF1-211ENST00000600868 SRYQ05066 204 aa12.87□□□□□ -0.35
UPF1-211ENST00000600868 TSPAN31Q12999 210 aa12.87□□□□□ -0.35
UPF1-211ENST00000600868 OR7A5Q15622 319 aa12.87□□□□□ -0.35
UPF1-211ENST00000600868 FAHD1Q6P587 224 aa12.87□□□□□ -0.35
UPF1-211ENST00000600868 GFRALQ6UXV0 394 aa12.87□□□□□ -0.35
UPF1-211ENST00000600868 CD300LDQ6UXZ3 194 aa12.87□□□□□ -0.35
UPF1-211ENST00000600868 MAMDC2Q7Z304 686 aaPredicted RBP12.87□□□□□ -0.35
UPF1-211ENST00000600868 SCAIQ8N9R8 606 aa12.87□□□□□ -0.35
UPF1-211ENST00000600868 ST6GALNAC3Q8NDV1 305 aa12.87□□□□□ -0.35
UPF1-211ENST00000600868 ZPLD1Q8TCW7 415 aa12.87□□□□□ -0.35
UPF1-211ENST00000600868 RELTQ969Z4 430 aa12.87□□□□□ -0.35
UPF1-211ENST00000600868 SLC25A36Q96CQ1 311 aa12.87□□□□□ -0.35
UPF1-211ENST00000600868 DNAJA3Q96EY1 480 aa12.87□□□□□ -0.35
UPF1-211ENST00000600868 GPA33Q99795 319 aa12.87□□□□□ -0.35
UPF1-211ENST00000600868 MRPL39Q9NYK5 338 aaKnown RBP12.87□□□□□ -0.35
UPF1-211ENST00000600868 EFCAB9A8MZ26 197 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 AHRRA9YTQ3 701 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 LRRN3E7EW58 273 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 PDLIM1O00151 329 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 CDC42EP2O14613 210 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 CXCL13O43927 109 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 HIST1H2ABP04908 130 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 TSPAN19P0C672 248 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 SAGP10523 405 aaPredicted RBP12.86□□□□□ -0.35
UPF1-211ENST00000600868 GSTM3P21266 225 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 GTF2E2P29084 291 aaKnown RBP12.86□□□□□ -0.35
UPF1-211ENST00000600868 GRPRP30550 384 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 NUP107P57740 925 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 PPP2R2BQ00005 443 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 RBPJQ06330 500 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 COX10Q12887 443 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 SF3B4Q15427 424 aaKnown RBP eCLIP12.86□□□□□ -0.353e-7■■□□□ 14
UPF1-211ENST00000600868 TRIP10Q15642 601 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 C3AR1Q16581 482 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 ANKDD1AQ495B1 522 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 GXYLT1Q4G148 440 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 OTUD3Q5T2D3 398 aaPredicted RBP12.86□□□□□ -0.35
UPF1-211ENST00000600868 PAQR6Q6TCH4 344 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 ZBTB49Q6ZSB9 765 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 H1FNTQ75WM6 255 aaPredicted RBP12.86□□□□□ -0.35
UPF1-211ENST00000600868 HIST3H2AQ7L7L0 130 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 CHMP1BQ7LBR1 199 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 MEX3DQ86XN8 651 aaKnown RBP12.86□□□□□ -0.35
UPF1-211ENST00000600868 LRRC17Q8N6Y2 441 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 ATG16L2Q8NAA4 619 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 OR5J2Q8NH18 312 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 FAM57AQ8TBR7 257 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 DNAJC9Q8WXX5 260 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 HIST1H2ACQ93077 130 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 CPNE4Q96A23 557 aaPredicted RBP12.86□□□□□ -0.35
UPF1-211ENST00000600868 EME1Q96AY2 570 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 ZHX1-C8orf76Q96EF9 292 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 UCN2Q96RP3 112 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 CIB1Q99828 191 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 NIPSNAP1Q9BPW8 284 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 RBM4BQ9BQ04 359 aaKnown RBP12.86□□□□□ -0.35
UPF1-211ENST00000600868 RBM4Q9BWF3 364 aaKnown RBP12.86□□□□□ -0.35
UPF1-211ENST00000600868 ASPNQ9BXN1 380 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 SRXN1Q9BYN0 137 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 C8orf4Q9NR00 106 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 B3GALT5Q9Y2C3 310 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 ZNF835Q9Y2P0 537 aa12.86□□□□□ -0.35
UPF1-211ENST00000600868 UNC119BA6NIH7 251 aa12.85□□□□□ -0.35
UPF1-211ENST00000600868 M0R082 166 aa12.85□□□□□ -0.35
UPF1-211ENST00000600868 ZNHIT1O43257 154 aa12.85□□□□□ -0.35
UPF1-211ENST00000600868 POU2F1P14859 743 aa12.85□□□□□ -0.35
UPF1-211ENST00000600868 ABOP16442 354 aa12.85□□□□□ -0.35
UPF1-211ENST00000600868 PTGER4P35408 488 aa12.85□□□□□ -0.35
UPF1-211ENST00000600868 DAPP51397 102 aa12.85□□□□□ -0.35
UPF1-211ENST00000600868 SGCBQ16585 318 aa12.85□□□□□ -0.35
UPF1-211ENST00000600868 ZNF239Q16600 458 aaKnown RBP12.85□□□□□ -0.35
UPF1-211ENST00000600868 EMC4Q5J8M3 183 aa12.85□□□□□ -0.35
UPF1-211ENST00000600868 OGFRL1Q5TC84 451 aaPredicted RBP12.85□□□□□ -0.35
UPF1-211ENST00000600868 KDM4DQ6B0I6 523 aa12.85□□□□□ -0.35
UPF1-211ENST00000600868 Q6ZPB1 254 aaPredicted RBP12.85□□□□□ -0.35
UPF1-211ENST00000600868 ADGRE4PQ86SQ3 457 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms