RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 MED31Q9Y3C7 131 aa16.88■□□□□ 0.29
UPF1-210ENST00000600689 BET1O15155 118 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 LDB3O75112 727 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 VSIG10L2P0DP72 767 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 C4BPBP20851 252 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 NDUFS1P28331 727 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 TAS2R43P59537 309 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 CDK5R1Q15078 307 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 DEFB134Q4QY38 66 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 OR7E24Q6IFN5 339 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 MFSD12Q6NUT3 480 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 FAM199XQ6PEV8 388 aaPredicted RBP16.87■□□□□ 0.29
UPF1-210ENST00000600689 TMEM64Q6YI46 380 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 STK35Q8TDR2 534 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 RADILQ96JH8 1075 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 MNTQ99583 582 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 MTHFD2LQ9H903 347 aaPredicted RBP16.87■□□□□ 0.29
UPF1-210ENST00000600689 TMEM74BQ9NUR3 256 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 CALML5Q9NZT1 146 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 MRTO4Q9UKD2 239 aaKnown RBP16.87■□□□□ 0.29
UPF1-210ENST00000600689 IER3IP1Q9Y5U9 82 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 NPTNQ9Y639 398 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 SNRNP200O75643 2136 aaKnown RBP16.87■□□□□ 0.29
UPF1-210ENST00000600689 GIMAP1-GIMAP5A0A087WTJ2 511 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 C17orf113A0A1B0GUU1 675 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 SC5DO75845 299 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 PRNPP04156 253 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 LIPCP11150 499 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 HIST1H1CP16403 213 aaKnown RBP16.87■□□□□ 0.29
UPF1-210ENST00000600689 GUCA2AQ02747 115 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 ZNF234Q14588 700 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 EXOSC7Q15024 291 aaKnown RBP16.87■□□□□ 0.29
UPF1-210ENST00000600689 ETFDHQ16134 617 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 GSG1LQ6UXU4 331 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 WNT2BQ93097 391 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 GIMAP5Q96F15 307 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 GFI1Q99684 422 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 SLC6A20Q9NP91 592 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 ATG2BQ96BY7 2078 aa16.87■□□□□ 0.29
UPF1-210ENST00000600689 ARID1AO14497 2285 aa16.86■□□□□ 0.29
UPF1-210ENST00000600689 TGM6O95932 706 aa16.86■□□□□ 0.29
UPF1-210ENST00000600689 AK4P27144 223 aaPredicted RBP16.86■□□□□ 0.29
UPF1-210ENST00000600689 P2RX1P51575 399 aa16.86■□□□□ 0.29
UPF1-210ENST00000600689 HNRNPA1L2Q32P51 320 aaKnown RBP16.86■□□□□ 0.29
UPF1-210ENST00000600689 HACD4Q5VWC8 232 aa16.86■□□□□ 0.29
UPF1-210ENST00000600689 THEM6Q8WUY1 208 aa16.86■□□□□ 0.29
UPF1-210ENST00000600689 MENTQ9BUN1 341 aa16.86■□□□□ 0.29
UPF1-210ENST00000600689 NRIP3Q9NQ35 241 aa16.86■□□□□ 0.29
UPF1-210ENST00000600689 DEC1Q9P2X7 70 aa16.86■□□□□ 0.29
UPF1-210ENST00000600689 KCNE5Q9UJ90 142 aa16.86■□□□□ 0.29
UPF1-210ENST00000600689 A0A1B0GUH1 482 aa16.86■□□□□ 0.29
UPF1-210ENST00000600689 RAD1O60671 282 aa16.86■□□□□ 0.29
UPF1-210ENST00000600689 RPS11P62280 158 aaKnown RBP eCLIP16.86■□□□□ 0.29
UPF1-210ENST00000600689 ERVK-25P63136 954 aa16.86■□□□□ 0.29
UPF1-210ENST00000600689 CBFBQ13951 182 aa16.86■□□□□ 0.29
UPF1-210ENST00000600689 PCGF3Q3KNV8 242 aa16.86■□□□□ 0.29
UPF1-210ENST00000600689 MRM1Q6IN84 353 aaKnown RBP16.86■□□□□ 0.29
UPF1-210ENST00000600689 TMEM88Q6PEY1 159 aa16.86■□□□□ 0.29
UPF1-210ENST00000600689 PDZD9Q8IXQ8 264 aa16.86■□□□□ 0.29
UPF1-210ENST00000600689 ZPLD1Q8TCW7 415 aa16.86■□□□□ 0.29
UPF1-210ENST00000600689 SMIM19Q96E16 107 aa16.86■□□□□ 0.29
UPF1-210ENST00000600689 HSPA12BQ96MM6 686 aa16.86■□□□□ 0.29
UPF1-210ENST00000600689 NMNAT3Q96T66 252 aa16.86■□□□□ 0.29
UPF1-210ENST00000600689 SDF2Q99470 211 aa16.86■□□□□ 0.29
UPF1-210ENST00000600689 ANKRD19PQ9H560 264 aa16.86■□□□□ 0.29
UPF1-210ENST00000600689 SYNDIG1Q9H7V2 258 aa16.86■□□□□ 0.29
UPF1-210ENST00000600689 GPN1Q9HCN4 374 aaPredicted RBP16.86■□□□□ 0.29
UPF1-210ENST00000600689 MOKQ9UQ07 419 aa16.86■□□□□ 0.29
UPF1-210ENST00000600689 MYO9BQ13459 2157 aa16.86■□□□□ 0.29
UPF1-210ENST00000600689 PAK4O96013 591 aaPredicted RBP16.85■□□□□ 0.29
UPF1-210ENST00000600689 RPN2P04844 631 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 C4orf46Q504U0 113 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 ZAR1Q86SH2 424 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 BVESQ8NE79 360 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 SFXN5Q8TD22 340 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 S100A16Q96FQ6 103 aaKnown RBP16.85■□□□□ 0.29
UPF1-210ENST00000600689 CHST6Q9GZX3 395 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 EVA1AQ9H8M9 152 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 C2orf42Q9NWW7 574 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 CPNE7Q9UBL6 633 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 SLC27A6Q9Y2P4 619 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 IFITM5A6NNB3 132 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 SDC3O75056 442 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 ZNF888P0CJ79 500 aaPredicted RBP16.85■□□□□ 0.29
UPF1-210ENST00000600689 IFNGR1P15260 489 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 GK2Q14410 553 aaPredicted RBP16.85■□□□□ 0.29
UPF1-210ENST00000600689 FAM69AQ5T7M9 428 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 TMED4Q7Z7H5 227 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 ASPGQ86U10 573 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 TMPRSS12Q86WS5 348 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 OR2L5Q8NG80 312 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 ZNF578Q96N58 590 aaPredicted RBP16.85■□□□□ 0.29
UPF1-210ENST00000600689 TSSK2Q96PF2 358 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 MBNL1Q9NR56 388 aaKnown RBP16.85■□□□□ 0.29
UPF1-210ENST00000600689 ZNF223Q9UK11 482 aaPredicted RBP16.85■□□□□ 0.29
UPF1-210ENST00000600689 ADAM29Q9UKF5 820 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 CES1P1Q9UKY3 287 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 GPR34Q9UPC5 381 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 UBE2QL1A1L167 161 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 SERPINA3P01011 423 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms